Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq54 143 2e-29 seq1935 87.8 2e-12 >seq54 Length=3562170 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||||||||||||| ||||| || | Sbjct 3279517 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 3279576 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||| ||||||||||| || Sbjct 3279577 GCACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCA 3279636 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | || || |||||||| |||||| Sbjct 3279637 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATC 3279680 >seq1935 Length=508564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 260/396 (66%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 2798 AAATTAATTGATGGAAAAAATACATCACAATCAAAACTCTCCATAATGCGCGTAATATAT 2857 |||| |||| | |||||||||| | || ||||| || |||||| | || | | || Sbjct 352421 AAATCAATTTCTTGAAAAAATACGTTACTTTCAAATTCCTGCATAATCCTTGTCACAAAT 352480 Query 2858 AGTTTTA-AGGGACACTTATAGTTAAGAACACTCTCATAAACAGATTTTCCTCCAATAAC 2916 ||| | | | || | | | ||| | | || || |||||| | ||||| | Sbjct 352481 AGTCTAAGATGGCCTGGTTT-GTTCATGGCTTCCTTATGAACAGAACTGCCTCCCGCTAT 352539 Query 2917 CCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTG-TCTATAGAAATTAAACGCATCGT 2975 ||| ||| ||| | || | | || || |||| || ||| || || || ||||| | Sbjct 352540 CCAAACCATGTCCACTTTGTTTGCTAATTCTGATTGCTCAATA-AATTTTAATGCATCAT 352598 Query 2976 CTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAA 3035 | || || | || ||||| || ||||| || || ||||| | |||||||| | || Sbjct 352599 CCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAA 352658 Query 3036 TAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTT 3095 | ||||||||||| | | ||| | ||||| | || || || |||||| | | Sbjct 352659 CTAAATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATATCTTCC 352718 Query 3096 TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAA 3155 | |||||||| |||| || || || |||| | || || | || | |||||| | || | Sbjct 352719 TACCCATAATCACCAAATCCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGA 352778 Query 3156 AATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 || |||| | ||| || || || ||||| |||| Sbjct 352779 AAAACATGAATTCATTCCTGAGCGGGGGCCAGGGCA 352814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427688876867280