Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq54 143 2e-29
seq1935 87.8 2e-12
>seq54
Length=3562170
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||| ||| ||||||| || || || |||||||||||||| ||||| || |
Sbjct 3279517 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 3279576
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||||||||| ||||||||||| ||
Sbjct 3279577 GCACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCA 3279636
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
||||||| ||||| || | | || || |||||||| ||||||
Sbjct 3279637 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATC 3279680
>seq1935
Length=508564
Score = 87.8 bits (96), Expect = 2e-12
Identities = 260/396 (66%), Gaps = 4/396 (1%)
Strand=Plus/Plus
Query 2798 AAATTAATTGATGGAAAAAATACATCACAATCAAAACTCTCCATAATGCGCGTAATATAT 2857
|||| |||| | |||||||||| | || ||||| || |||||| | || | | ||
Sbjct 352421 AAATCAATTTCTTGAAAAAATACGTTACTTTCAAATTCCTGCATAATCCTTGTCACAAAT 352480
Query 2858 AGTTTTA-AGGGACACTTATAGTTAAGAACACTCTCATAAACAGATTTTCCTCCAATAAC 2916
||| | | | || | | | ||| | | || || |||||| | ||||| |
Sbjct 352481 AGTCTAAGATGGCCTGGTTT-GTTCATGGCTTCCTTATGAACAGAACTGCCTCCCGCTAT 352539
Query 2917 CCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTG-TCTATAGAAATTAAACGCATCGT 2975
||| ||| ||| | || | | || || |||| || ||| || || || ||||| |
Sbjct 352540 CCAAACCATGTCCACTTTGTTTGCTAATTCTGATTGCTCAATA-AATTTTAATGCATCAT 352598
Query 2976 CTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAA 3035
| || || | || ||||| || ||||| || || ||||| | |||||||| | ||
Sbjct 352599 CCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAA 352658
Query 3036 TAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTT 3095
| ||||||||||| | | ||| | ||||| | || || || |||||| | |
Sbjct 352659 CTAAATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATATCTTCC 352718
Query 3096 TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAA 3155
| |||||||| |||| || || || |||| | || || | || | |||||| | || |
Sbjct 352719 TACCCATAATCACCAAATCCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGA 352778
Query 3156 AATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191
|| |||| | ||| || || || ||||| ||||
Sbjct 352779 AAAACATGAATTCATTCCTGAGCGGGGGCCAGGGCA 352814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427688876867280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |