Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq19 134 1e-26 seq878 87.8 1e-12 >seq19 Length=4596781 Score = 134 bits (148), Expect = 1e-26 Identities = 327/481 (68%), Gaps = 26/481 (5%) Strand=Plus/Minus Query 22453 TCTCACATACTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-G 22511 || ||| | ||||| ||||||| | |||||||| ||| || ||| | ||| | Sbjct 3965538 TCCCACGTTCTGGCTTTCTTTGTGCCGAGTGATGGCATAGTAAATGAAAACTTGGTGGAG 3965479 Query 22512 CAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGT 22571 | ||| || || ||| || | ||| |||||||| | ||||||||| || || | Sbjct 3965478 CGGTTTAGCCAA-GAAGTTCAG---ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAAT 3965423 Query 22572 GGCAATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAA 22631 || |||||||| || ||| |||| ||||| | || || ||| || | || ||| Sbjct 3965422 TGCCATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACAGTTACGT---TAA 3965366 Query 22632 AGA----GAATCAAGCCGCATTGTTTTCAGCAGC-TGAAGATA-TGCCATGTGTTAAAGC 22685 ||| ||| ||| || | |||| | | | ||| | |||| ||||| |||| Sbjct 3965365 AGATTCCGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGT-AAAG- 3965308 Query 22686 CAAGGCACAGTGGGCTGCACAATGG-CTGAATGCCACACATAAGT---CTATCGCAACAC 22741 |||||| | ||||| || ||| ||| || ||| | | | ||| | | || Sbjct 3965307 -AAGGCAGACTGGGCCTTGCATTGGACTG---GCGACAAAGAGGCTACCTACGGGGA-AC 3965253 Query 22742 GTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATAT 22801 | | ||| |||||| ||||| ||||| || | |||||||| || |||||| | |||| Sbjct 3965252 GGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATAT 3965193 Query 22802 TCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCC 22861 ||||||| |||||||| || ||||| || || |||||||||| || | |||||| Sbjct 3965192 TCTGGCTCAAGAAACGCGACCTGATGCC-TGGCTGACGTTTTCCAATGAACTTATTAGCA 3965134 Query 22862 GTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAAC 22921 | || || ||| |||||||||||||||| || || |||| | ||| ||| |||||| Sbjct 3965133 GAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACAACTGGTCCACAAAC 3965074 Query 22922 C 22922 | Sbjct 3965073 C 3965073 >seq878 Length=898115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| ||||| ||||| ||||| || | |||||||| || |||||| | |||||||||| Sbjct 679032 TGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCAATATTCTGGC 679091 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | |||||||||| || | |||||| | || | Sbjct 679092 TCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATG 679151 Query 22868 A 22868 | Sbjct 679152 A 679152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356161047572533