Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1818 98.7 1e-15 seq975 98.7 1e-15 seq1 98.7 1e-15 seq541 95.1 1e-14 seq377 93.3 4e-14 seq182 86.0 6e-12 >seq1818 Length=636242 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || |||| || | ||||| || | Sbjct 433025 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTA 433083 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | | Sbjct 433084 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 433142 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || | Sbjct 433143 TGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCG 433202 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| ||||| || ||||| Sbjct 433203 TAAGGGTTTTCACGAAAATCTGCAT 433227 >seq975 Length=833997 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 558512 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTG 558570 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | | Sbjct 558571 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 558629 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | ||| | ||| || | || || ||||| | ||| | ||||| || | Sbjct 558630 TGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCCG 558689 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| ||||| || ||||| Sbjct 558690 TAAGGGTTTTCACGAAAATCTGCAT 558714 >seq1 Length=12736304 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 |||||||| ||||||||||| || || || |||| || | ||||| || || || || Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTGCTTGCC 12236749 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 |||| ||||||| | |||||||| ||||| || ||||| || || ||| | || | | Sbjct 12236750 AGCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATC-CTGAATCTTGGCCT 12236807 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || || | | Sbjct 12236808 TTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGG 12236867 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| ||||| || ||||| Sbjct 12236868 TTTTCACGAAAATCTGCAT 12236886 >seq541 Length=1170729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || |||||||| || ||||| ||||| | |||| ||||| Sbjct 610523 AACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 610582 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || || ||| |||| || | ||||| || || || ||||| ||||| || Sbjct 610583 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTG 610642 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | ||| | ||||| ||||||||||||| | ||| | ||||| Sbjct 610643 GATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 610702 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || || ||||| || ||||| Sbjct 610703 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 610732 >seq377 Length=1354867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139551 GCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGT 139610 ||| ||| | ||| | || |||||||| || ||||||||||| | |||| | Sbjct 824416 GCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCAT 824475 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| ||||| || || ||| |||| || | ||||| || || || ||||| ||||| | Sbjct 824476 CTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 824535 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || || | | ||| | ||||| ||||||||||||| | || | | Sbjct 824536 CTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGG 824595 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||| | || || ||||| || ||||| Sbjct 824596 TCTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824629 >seq182 Length=1985155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 1379000 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCA-TCTTCCAGTTG 1379058 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | | Sbjct 1379059 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 1379117 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | | || | ||| | ||| | | ||| || |||||| | | | ||||| || | Sbjct 1379118 TGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGGTCTTCCCCG 1379177 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| | ||| || ||||| Sbjct 1379178 TAAGGGTTTTCAGGAAAATCTGCAT 1379202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495960378431200