Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1818 98.7 1e-15
seq975 98.7 1e-15
seq1 98.7 1e-15
seq541 95.1 1e-14
seq377 93.3 4e-14
seq182 86.0 6e-12
>seq1818
Length=636242
Score = 98.7 bits (108), Expect = 1e-15
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| |||||||| ||||||||||| || || || |||| || | ||||| || |
Sbjct 433025 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTA 433083
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | |
Sbjct 433084 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 433142
Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || |
Sbjct 433143 TGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCG 433202
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | ||||| ||||| || |||||
Sbjct 433203 TAAGGGTTTTCACGAAAATCTGCAT 433227
>seq975
Length=833997
Score = 98.7 bits (108), Expect = 1e-15
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| |||||||| ||||||||||| || || || |||| || | ||||| || ||
Sbjct 558512 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTG 558570
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | |
Sbjct 558571 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 558629
Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | |||| | ||| | ||| || | || || ||||| | ||| | ||||| || |
Sbjct 558630 TGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCCG 558689
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | ||||| ||||| || |||||
Sbjct 558690 TAAGGGTTTTCACGAAAATCTGCAT 558714
>seq1
Length=12736304
Score = 98.7 bits (108), Expect = 1e-15
Identities = 145/199 (73%), Gaps = 5/199 (3%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|||||||| ||||||||||| || || || |||| || | ||||| || || || ||
Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTGCTTGCC 12236749
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685
|||| ||||||| | |||||||| ||||| || ||||| || || ||| | || | |
Sbjct 12236750 AGCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATC-CTGAATCTTGGCCT 12236807
Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || || | |
Sbjct 12236808 TTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGG 12236867
Query 139746 TTTTTACGAATATTTGCAT 139764
|||| ||||| || |||||
Sbjct 12236868 TTTTCACGAAAATCTGCAT 12236886
>seq541
Length=1170729
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| | ||| | || |||||||| || ||||| ||||| | |||| |||||
Sbjct 610523 AACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 610582
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| || || ||| |||| || | ||||| || || || ||||| ||||| ||
Sbjct 610583 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTG 610642
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| || || | | ||| | ||||| ||||||||||||| | ||| | |||||
Sbjct 610643 GATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 610702
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| || || ||||| || |||||
Sbjct 610703 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 610732
>seq377
Length=1354867
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 139551 GCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGT 139610
||| ||| | ||| | || |||||||| || ||||||||||| | |||| |
Sbjct 824416 GCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCAT 824475
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| ||||| || || ||| |||| || | ||||| || || || ||||| ||||| |
Sbjct 824476 CTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 824535
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| ||| || || | | ||| | ||||| ||||||||||||| | || | |
Sbjct 824536 CTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGG 824595
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||||| | || || ||||| || |||||
Sbjct 824596 TCTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824629
>seq182
Length=1985155
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| |||||||| ||||||||||| || || || |||| || | ||||| || ||
Sbjct 1379000 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCA-TCTTCCAGTTG 1379058
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | |
Sbjct 1379059 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 1379117
Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | | || | ||| | ||| | | ||| || |||||| | | | ||||| || |
Sbjct 1379118 TGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGGTCTTCCCCG 1379177
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | ||||| | ||| || |||||
Sbjct 1379178 TAAGGGTTTTCAGGAAAATCTGCAT 1379202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495960378431200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |