Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq19 279 7e-70 seq878 138 2e-27 seq348 129 8e-25 seq674 107 3e-18 >seq19 Length=4596781 Score = 279 bits (308), Expect = 7e-70 Identities = 425/600 (71%), Gaps = 9/600 (2%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| ||||||| || || || || ||||| | |||||| ||||| ||||| ||||| Sbjct 3965088 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 3965147 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 ||||||||||| || || ||||| ||| | || || || ||||| ||||| | |||||| Sbjct 3965148 TTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAA 3965206 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || |||||||||||||||||||| || || |||||| | |||| | || || || | Sbjct 3965207 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 3965266 Query 50125 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 | | |||| |||| | ||||| || |||||| |||||||||||||| Sbjct 3965267 GCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTC---TTTACACAAGGCATT 3965323 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || | | ||| || |||||| | | |||| | ||||||||| ||| | || || Sbjct 3965324 GTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | ||||| ||||| || ||||| |||||||| ||||| || || || || |||||||| Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361 | || || |||||||| |||||| | ||| || || | || |||||||| ||||| Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 || ||||| | |||| || |||| || || || ||| | | | || | || | Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 3965563 Query 50422 AGTTTATTCC-AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 || ||||| | | || || || || | ||| || ||||| |||||||||| || Sbjct 3965564 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 3965622 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| || || | |||||| | ||| || ||| | || | || ||||| || ||||| Sbjct 3965623 AGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq878 Length=898115 Score = 138 bits (152), Expect = 2e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || |||||||||||||||||||| || || ||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 50102 CAACAA 50107 | |||| Sbjct 679034 CCACAA 679029 >seq348 Length=1658837 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||||||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | |||| ||||||||||| ||| ||||||| | |||| | || || |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 305568 CTGTTTCTTATACCATA 305552 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 300815 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 300756 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| || || |||||| | || ||||| ||||| Sbjct 300755 TAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGATAC 300696 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 300695 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGCGT 300636 Query 79480 TTATTAGA 79487 ||||| || Sbjct 300635 TTATTTGA 300628 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 296253 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 296194 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 296193 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 296134 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 296133 TCCAGGTAAATAGC 296120 >seq674 Length=1058379 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| ||||||||||||||||||||||| || || | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| || |||||||| || ||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 558129 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 558128 ACCACTCTTTCCCC 558115 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| | ||||| || ||||||| ||||||||||||||| ||||| || ||| | Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 |||||||||||||| || ||||||| Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718118762626040