Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq19 223 3e-53 seq3332 131 2e-25 seq878 111 2e-19 >seq19 Length=4596781 Score = 223 bits (246), Expect = 3e-53 Identities = 570/859 (66%), Gaps = 19/859 (2%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | ||||| |||| ||||| |||||||||||||| Sbjct 3964799 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC----- 3964853 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682 ||||||||||| ||||| ||||| || |||||||||||| | | || || || || Sbjct 3964854 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 3964913 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 ||||||| || | | | || || || | ||||||||||| || |||||| Sbjct 3964914 AAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTG 3964973 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 |||||||| | || || || ||||| | | | || | || | | ||||| Sbjct 3964974 CAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 3965033 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGT 13859 || || | | ||||| ||| | | ||| || ||||| | || ||| Sbjct 3965034 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGT 3965090 Query 13860 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13919 || || || | || ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 3965091 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 3965150 Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979 ||||| || | || ||||||| | ||||| || | ||| ||||| | ||||| || Sbjct 3965151 GAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 3965209 Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039 || |||||||| ||||| || || |||||||| | | | ||||| || | | || Sbjct 3965210 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 3965269 Query 14040 TTTTTGTTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14098 | ||||| || | |||| | ||||| || | || ||| | | || |||||| Sbjct 3965270 TCTTTGT-CGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGT 3965325 Query 14099 TTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 | | || || || | | ||||| | |||| | | | || ||| | ||||| || Sbjct 3965326 CTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAG 3965385 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 | || ||||| ||||| || ||||||||||| || || || || ||||| || || | Sbjct 3965386 GAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 3965445 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 ||||| | || ||||| | ||| | || |||| |||||||| ||||| || Sbjct 3965446 GGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCC 3965505 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 |||||| | |||| || |||| | || | ||||||| ||| ||| || || Sbjct 3965506 ATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG 3965565 Query 14339 TTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14397 || | | | || | ||||| |||||||| || || ||| |||||||||| || Sbjct 3965566 GGATTCCTGGTGCTGA-ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAG 3965624 Query 14398 CGACAGCTTTTTTATACAT 14416 | ||||||| | |||||| Sbjct 3965625 CCTCAGCTTTCTCATACAT 3965643 >seq3332 Length=249688 Score = 131 bits (144), Expect = 2e-25 Identities = 535/834 (64%), Gaps = 21/834 (3%) Strand=Plus/Minus Query 13597 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13656 |||| || |||||||||||||| || ||||||||||| ||||| ||||||| ||||||| Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893 Query 13657 GATTTATTGACATAAACACTTTATCACAACCTAGTT-CTAATAGTAA-TCTATCAGCAAT 13714 ||||| | | | || || | ||||||||| ||| ||| || || || || Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACC--TAAGTCAGTCTGCCAT 148835 Query 13715 AAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTAT 13774 || |||||||| || ||||| || ||||| || || || || || || | Sbjct 148834 GAATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGC 148775 Query 13775 ATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAA---T 13831 | | | || || | ||||| ||||| | | ||| | ||| | | | Sbjct 148774 CTGTGGGAGGAACTCCTGGTCTATCCTAACAGCAT---TGATAGTTATTTCCTTCACTCT 148718 Query 13832 CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAG 13891 || | ||||| || || ||||| || || | || ||||| | | || | Sbjct 148717 CTGCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAA 148658 Query 13892 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGtt 13950 ||||||||||| |||||||| || || ||||| || | || ||||||| | | || Sbjct 148657 ACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATT 148598 Query 13951 tttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAA 14010 | || | ||| ||||| | ||| | || || ||||| | ||||| || ||||||| Sbjct 148597 TCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAA 148538 Query 14011 ACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14070 | | | | ||| || | | || | ||||| | | ||| ||||| | Sbjct 148537 AGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAAT 148478 Query 14071 CAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTT 14130 | | || || | | || |||||| || || | || || | | |||| |||||| Sbjct 148477 CTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTT 148418 Query 14131 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190 | | | | ||| || || ||| | || | ||| |||| ||||| || |||||||||| Sbjct 148417 TGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCA 148358 Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250 | || || || || ||||| || || | ||||| | | || ||||| | | | | Sbjct 148357 TGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACC 148298 Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AAT----A 14304 || |||| |||||||| ||| | ||| |||| | ||||| || ||| ||| | Sbjct 148297 ACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAA 148238 Query 14305 TGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA--TCCTT 14362 || ||||| | | ||| ||| || || || ||| | | | || ||||| Sbjct 148237 CGTGGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTT 148180 Query 14363 AGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 ||||||| || || ||| |||||||||| ||| ||||||| ||| |||| Sbjct 148179 GGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 148126 >seq878 Length=898115 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || || |||||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 679034 CCACAACCCGTTCTCC 679019 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 680878 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 680820 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 680819 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 680760 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 680759 CATAAAGTCAAATGGATTT 680741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479627790817400