Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq19 214 2e-50 seq3332 120 3e-22 seq878 105 6e-18 >seq19 Length=4596781 Score = 214 bits (236), Expect = 2e-50 Identities = 566/859 (66%), Gaps = 19/859 (2%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || ||||| | ||||| |||| ||||| |||||||| ||||| Sbjct 3964799 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC----- 3964853 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470 ||||||||||| ||||| ||||| || || ||||||||| | | || || || || Sbjct 3964854 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 3964913 Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530 ||||||| || | | | || || || | ||||||||||| || |||||| Sbjct 3964914 AAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTG 3964973 Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590 |||||||| | || || || ||||| | | | || | || | | ||||| Sbjct 3964974 CAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 3965033 Query 13591 ACAGCCTCGTTTATAATAAT---CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGT 13647 || || | | ||||| || ||| | | | || ||||| | || ||| Sbjct 3965034 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGT 3965090 Query 13648 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13707 || || || | || ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 3965091 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 3965150 Query 13708 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 13767 ||||| | | | || ||||||| | ||||| || | ||| ||||| | || || || Sbjct 3965151 GAAAACG-TCAGCCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 3965209 Query 13768 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCT 13827 || |||||||| ||||| || || |||||||| | | | ||||| || | | || Sbjct 3965210 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 3965269 Query 13828 TTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 13887 | ||||| |||| | ||||| || | || ||| | | || |||||| Sbjct 3965270 TCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTC 3965326 Query 13888 TCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 13947 | || || ||||| | | |||| | |||| | | | || ||| | ||||| || Sbjct 3965327 TGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGG 3965386 Query 13948 AAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTA 14007 | || ||||| ||||| || |||||||| || || || || || ||||| ||||| | Sbjct 3965387 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGG 3965446 Query 14008 GCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 ||||||| || || || | ||| | || ||||||||||||| || || ||| Sbjct 3965447 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 3965506 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||||| | |||| || |||| | || | ||||||| ||| ||| || || Sbjct 3965507 TCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 3965566 Query 14128 TTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 || | | ||| || ||||| |||||||| || || ||| |||||||||| || Sbjct 3965567 GATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAG 3965624 Query 14186 CGACAGCTTTTTTATACAT 14204 | ||||||| | |||||| Sbjct 3965625 CCTCAGCTTTCTCATACAT 3965643 >seq3332 Length=249688 Score = 120 bits (132), Expect = 3e-22 Identities = 529/830 (64%), Gaps = 13/830 (2%) Strand=Plus/Minus Query 13385 CTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATG 13444 |||| || ||||| |||||||| || ||||||||||| ||||| ||||||| || |||| Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893 Query 13445 GATTTGTTGACATAAACACTTTATCACAACCTAGTT-CTAATAATAATCTATCAGCAATA 13503 ||||| | | | || || | ||||||||| ||| | | || || || || Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTA-AGTCAGTCTGCCATG 148834 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 || |||||||| || ||||| || ||||| || || || || || || | Sbjct 148833 AATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGCC 148774 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623 | | | || || | ||||| ||||| | | | | || ||| | | | Sbjct 148773 TGTGGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCTGC 148714 Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683 | ||||| || || ||||| || || | || ||||| | | || | ||| Sbjct 148713 TCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCC 148654 Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGtttttt 13742 |||||||| |||||||| || || ||||| || | || ||||||| | | ||| || Sbjct 148653 TCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTT 148594 Query 13743 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||| ||||| | || | || || ||||| | ||||| || |||||||| | Sbjct 148593 GAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTC 148534 Query 13803 TATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | | ||| || | | || | ||||| | ||| ||||| || | Sbjct 148533 CACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGC 148474 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGT 13922 || || | | || |||||| ||||| | ||||| | | ||| ||||||| | Sbjct 148473 CTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGA 148414 Query 13923 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGC 13982 | | ||| || || ||| | || | ||| |||| ||||| || |||||||| || || Sbjct 148413 ATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGC 148354 Query 13983 TATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTC 14042 || || || ||||| ||||| | ||||||| | || || || | | | | || Sbjct 148353 AATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTC 148294 Query 14043 TGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AAT----ATGTT 14096 ||||||||||||| || | ||| |||| | ||||| || ||| ||| | || Sbjct 148293 CACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTG 148234 Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAA 14154 ||||| | | ||| ||| || || || ||| | | | || ||||| ||| Sbjct 148233 GGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGGAA 148176 Query 14155 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 |||| || || ||| |||||||||| ||| ||||||| ||| |||| Sbjct 148175 AGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 148126 >seq878 Length=898115 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 679034 CCACAACCCGTTCTCC 679019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 680878 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 680820 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 680819 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 680760 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 680759 CATAAAGTCAAATGGATTT 680741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478488828782040