Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq19 214 2e-50
seq3332 120 3e-22
seq878 105 6e-18
>seq19
Length=4596781
Score = 214 bits (236), Expect = 2e-50
Identities = 566/859 (66%), Gaps = 19/859 (2%)
Strand=Plus/Plus
Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410
|| || || || ||||| | ||||| |||| ||||| |||||||| |||||
Sbjct 3964799 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC----- 3964853
Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470
||||||||||| ||||| ||||| || || ||||||||| | | || || || ||
Sbjct 3964854 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 3964913
Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530
||||||| || | | | || || || | ||||||||||| || ||||||
Sbjct 3964914 AAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTG 3964973
Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590
|||||||| | || || || ||||| | | | || | || | | |||||
Sbjct 3964974 CAATTCATCCTAATGAGCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 3965033
Query 13591 ACAGCCTCGTTTATAATAAT---CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGT 13647
|| || | | ||||| || ||| | | | || ||||| | || |||
Sbjct 3965034 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGT 3965090
Query 13648 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13707
|| || || | || ||||| ||||| || | ||||||||||| ||||||||||| ||
Sbjct 3965091 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 3965150
Query 13708 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 13767
||||| | | | || ||||||| | ||||| || | ||| ||||| | || || ||
Sbjct 3965151 GAAAACG-TCAGCCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 3965209
Query 13768 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCT 13827
|| |||||||| ||||| || || |||||||| | | | ||||| || | | ||
Sbjct 3965210 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 3965269
Query 13828 TTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 13887
| ||||| |||| | ||||| || | || ||| | | || ||||||
Sbjct 3965270 TCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTC 3965326
Query 13888 TCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 13947
| || || ||||| | | |||| | |||| | | | || ||| | ||||| ||
Sbjct 3965327 TGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGG 3965386
Query 13948 AAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTA 14007
| || ||||| ||||| || |||||||| || || || || || ||||| ||||| |
Sbjct 3965387 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGG 3965446
Query 14008 GCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067
||||||| || || || | ||| | || ||||||||||||| || || |||
Sbjct 3965447 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 3965506
Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127
||||| | |||| || |||| | || | ||||||| ||| ||| || ||
Sbjct 3965507 TCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 3965566
Query 14128 TTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185
|| | | ||| || ||||| |||||||| || || ||| |||||||||| ||
Sbjct 3965567 GATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAG 3965624
Query 14186 CGACAGCTTTTTTATACAT 14204
| ||||||| | ||||||
Sbjct 3965625 CCTCAGCTTTCTCATACAT 3965643
>seq3332
Length=249688
Score = 120 bits (132), Expect = 3e-22
Identities = 529/830 (64%), Gaps = 13/830 (2%)
Strand=Plus/Minus
Query 13385 CTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATG 13444
|||| || ||||| |||||||| || ||||||||||| ||||| ||||||| || ||||
Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893
Query 13445 GATTTGTTGACATAAACACTTTATCACAACCTAGTT-CTAATAATAATCTATCAGCAATA 13503
||||| | | | || || | ||||||||| ||| | | || || || ||
Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTA-AGTCAGTCTGCCATG 148834
Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563
|| |||||||| || ||||| || ||||| || || || || || || |
Sbjct 148833 AATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGGCC 148774
Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623
| | | || || | ||||| ||||| | | | | || ||| | | |
Sbjct 148773 TGTGGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCTGC 148714
Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683
| ||||| || || ||||| || || | || ||||| | | || | |||
Sbjct 148713 TCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCC 148654
Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGtttttt 13742
|||||||| |||||||| || || ||||| || | || ||||||| | | ||| ||
Sbjct 148653 TCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTT 148594
Query 13743 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802
| ||| ||||| | || | || || ||||| | ||||| || |||||||| |
Sbjct 148593 GAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTC 148534
Query 13803 TATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862
| | ||| || | | || | ||||| | ||| ||||| || |
Sbjct 148533 CACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGC 148474
Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGT 13922
|| || | | || |||||| ||||| | ||||| | | ||| ||||||| |
Sbjct 148473 CTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGA 148414
Query 13923 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGC 13982
| | ||| || || ||| | || | ||| |||| ||||| || |||||||| || ||
Sbjct 148413 ATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGC 148354
Query 13983 TATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTC 14042
|| || || ||||| ||||| | ||||||| | || || || | | | | ||
Sbjct 148353 AATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTC 148294
Query 14043 TGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AAT----ATGTT 14096
||||||||||||| || | ||| |||| | ||||| || ||| ||| | ||
Sbjct 148293 CACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTG 148234
Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAA 14154
||||| | | ||| ||| || || || ||| | | | || ||||| |||
Sbjct 148233 GGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGGAA 148176
Query 14155 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204
|||| || || ||| |||||||||| ||| ||||||| ||| ||||
Sbjct 148175 AGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 148126
>seq878
Length=898115
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||||| || || || || |||||||| ||||| || || |||||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 13802 CTATTAGTCGTTCTCC 13817
| | | ||||||||
Sbjct 679034 CCACAACCCGTTCTCC 679019
Score = 91.5 bits (100), Expect = 1e-13
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 680878 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 680820
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 680819 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 680760
Query 13431 CATAAAATCGAATGGATTT 13449
|||||| || |||||||||
Sbjct 680759 CATAAAGTCAAATGGATTT 680741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478488828782040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |