Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq19 266 4e-66
seq3332 221 2e-52
seq878 132 6e-26
seq348 129 8e-25
seq674 111 2e-19
>seq19
Length=4596781
Score = 266 bits (294), Expect = 4e-66
Identities = 635/945 (67%), Gaps = 30/945 (3%)
Strand=Plus/Plus
Query 41714 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT-TGAGACATAACTCCCA 41771
||||| ||| |||||| |||| || | |||| ||| | || | ||||| |||||||
Sbjct 3964755 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCA 3964814
Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831
| | || || ||||| || | ||||| || || || ||||||| ||| ||||
Sbjct 3964815 TCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATAT 3964869
Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891
| |||||||| ||||| ||||| || | ||| || ||| || | || |
Sbjct 3964870 TCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCA 3964929
Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951
| | || ||||| | ||| || ||||| ||||| | |||||||| | || |
Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989
Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011
| || || || | | | | || || || | || || || || || | | ||||
Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT---TAATAA 3965046
Query 42012 TAGAT--CTT-ACTGTTT-CTTCACTCG---GTGGATACAATAAATGTTTAAACATCAAA 42064
| | ||| ||| | | ||| | ||||| || | ||||| |||||||
Sbjct 3965047 TTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGAC-CAGT---TGTTTGAACATCAGG 3965102
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || || || ||||| | |||||||||||| ||||| | ||| ||||||||||| ||
Sbjct 3965103 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG- 3965161
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|| ||||| ||| | || || || ||||| ||||| | |||||| || ||||||||||||
Sbjct 3965162 CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAG 3965221
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241
|||||||| || || |||||| | | || | || || || | | | ||||
Sbjct 3965222 ATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCA 3965281
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301
|||| | ||||| || ||||||||| ||||||||||| || | | ||| ||
Sbjct 3965282 GTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTCTGGAGGGCGTTG 3965338
Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
|||||| | | |||| | ||||||||| || | || || | ||||| |||||
Sbjct 3965339 AAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATC 3965398
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| ||||| |||||||| ||||| || || || || |||||||| | ||| || |||| |
Sbjct 3965399 TCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3965458
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| |||||| | ||| || || | || ||||| || ||||| || ||||| | ||
Sbjct 3965459 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACA 3965518
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC-AATC 42540
|| || |||| || || || ||| ||| | || || || || | ||||| |
Sbjct 3965519 AAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGG-CTTCAGGGATTCCTGGTG 3965577
Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600
| || || || || | ||| || ||||| | |||||||| || || || || || |
Sbjct 3965578 CTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTC 3965637
Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
|||||| | ||| |||||| | || | | ||||| || |||||
Sbjct 3965638 ATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq3332
Length=249688
Score = 221 bits (244), Expect = 2e-52
Identities = 597/901 (66%), Gaps = 18/901 (2%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| ||||| || | || || | || | | || || || || |||||||| |||
Sbjct 148983 GACATCACTCCTATCCTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCT 148924
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878
|||| ||| ||||| ||||| | ||||| ||||| || | ||| || ||||
Sbjct 148923 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 148864
Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATA-TGTTTTCATCATTTCACA 41937
|| | || | | | || ||||| |||||||| ||||| || ||| | | | ||
Sbjct 148863 CCTAGTTTCTACCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CA 148805
Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997
||||| || || || || || || | ||| | || || || || || || ||
Sbjct 148804 GTTCATCCCAATGAGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAAC 148745
Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTA 42055
|| | || || || || | | | ||| | || ||| || | | |||||
Sbjct 148744 AGCAT-TGATAGT-TATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTG 148687
Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115
||||||| || || || | ||| | |||||||||||| ||||| | || ||||||
Sbjct 148686 AACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 148627
Query 42116 AA-CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174
|| |||||| || ||||| |||| | || || ||||| ||||| |||||| | || ||
Sbjct 148626 AACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACC 148567
Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231
| ||||| |||||||||| || |||||| | | | | || || || | | |
Sbjct 148566 AAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTC 148507
Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291
|||| | ||| |||||||| |||||||| || |||||||||| || ||
Sbjct 148506 TTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTC 148447
Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351
|||| || |||||| | | | | || || |||||||| ||| || || | | ||
Sbjct 148446 GATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAG 148387
Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411
|||| |||| || ||||| |||||||| ||||| || || || || |||||||| | |||
Sbjct 148386 ACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGC 148327
Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471
|| || | ||| |||||| | | | | || | || ||||| || ||| | || |
Sbjct 148326 TTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAAC 148267
Query 42472 ACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525
||| | ||||| || ||| ||| || || |||||||| | | || || || |
Sbjct 148266 ACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGG-CT 148208
Query 42526 TAATTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584
| | ||||| | ||| || || || || | || || ||||| | |||||||| |
Sbjct 148207 TCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGG 148148
Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644
| || || || || ||| |||| | ||| | ||||| || | || ||||| || ||||
Sbjct 148147 AAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAA 148088
Query 42645 A 42645
|
Sbjct 148087 A 148087
>seq878
Length=898115
Score = 132 bits (146), Expect = 6e-26
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| |||||||| || |||||||||||||||||||| || || ||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 42207 C 42207
|
Sbjct 679034 C 679034
>seq348
Length=1658837
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || |
Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 305568 CTGTTTCTTATACCAT 305553
Score = 123 bits (136), Expect = 3e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| ||||||||||| || |||||| |||| |||| || || ||||| || |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| || || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| |||| ||||||||||| ||| ||||||| | |||| | || || ||||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201
Score = 104 bits (114), Expect = 3e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | | ||| || ||||| || || || || |||||||
Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||||||||| || |||| |||||| || || ||||| || || ||||| ||||
Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | |||||||| || ||||| | ||||| || || || || || || | || |
Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 300637 GTTTATTTGA 300628
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| ||||||||||| || | || || || |||| | ||
Sbjct 296253 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 296194
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| ||
Sbjct 296193 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 296134
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 296133 TCCAGGTAAATAGC 296120
>seq674
Length=1058379
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | ||| ||||||||||||||||||||||| || || | || ||
Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130
Score = 93.3 bits (102), Expect = 6e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621
||| ||||| ||||||| || ||||| | ||||||||||||||| ||||| |||||| |
Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979
Query 42622 ATATTGAATTGGGAAAATAACAAATC 42647
||||| |||||||| || |||||||
Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670999007410360
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