Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 266 4e-66 seq3332 221 2e-52 seq878 132 6e-26 seq348 129 8e-25 seq674 111 2e-19 >seq19 Length=4596781 Score = 266 bits (294), Expect = 4e-66 Identities = 635/945 (67%), Gaps = 30/945 (3%) Strand=Plus/Plus Query 41714 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT-TGAGACATAACTCCCA 41771 ||||| ||| |||||| |||| || | |||| ||| | || | ||||| ||||||| Sbjct 3964755 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCA 3964814 Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 | | || || ||||| || | ||||| || || || ||||||| ||| |||| Sbjct 3964815 TCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATAT 3964869 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 | |||||||| ||||| ||||| || | ||| || ||| || | || | Sbjct 3964870 TCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCA 3964929 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | | || ||||| | ||| || ||||| ||||| | |||||||| | || | Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || || | | | | || || || | || || || || || | | |||| Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT---TAATAA 3965046 Query 42012 TAGAT--CTT-ACTGTTT-CTTCACTCG---GTGGATACAATAAATGTTTAAACATCAAA 42064 | | ||| ||| | | ||| | ||||| || | ||||| ||||||| Sbjct 3965047 TTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGAC-CAGT---TGTTTGAACATCAGG 3965102 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || || ||||| | |||||||||||| ||||| | ||| ||||||||||| || Sbjct 3965103 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG- 3965161 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| ||| | || || || ||||| ||||| | |||||| || |||||||||||| Sbjct 3965162 CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAG 3965221 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241 |||||||| || || |||||| | | || | || || || | | | |||| Sbjct 3965222 ATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCA 3965281 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||| | ||||| || ||||||||| ||||||||||| || | | ||| || Sbjct 3965282 GTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTCTGGAGGGCGTTG 3965338 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 |||||| | | |||| | ||||||||| || | || || | ||||| ||||| Sbjct 3965339 AAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATC 3965398 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || ||||| |||||||| ||||| || || || || |||||||| | ||| || |||| | Sbjct 3965399 TCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3965458 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || |||||| | ||| || || | || ||||| || ||||| || ||||| | || Sbjct 3965459 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACA 3965518 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC-AATC 42540 || || |||| || || || ||| ||| | || || || || | ||||| | Sbjct 3965519 AAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGG-CTTCAGGGATTCCTGGTG 3965577 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | || || || || | ||| || ||||| | |||||||| || || || || || | Sbjct 3965578 CTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTC 3965637 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||| | ||| |||||| | || | | ||||| || ||||| Sbjct 3965638 ATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 221 bits (244), Expect = 2e-52 Identities = 597/901 (66%), Gaps = 18/901 (2%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||| || | || || | || | | || || || || |||||||| ||| Sbjct 148983 GACATCACTCCTATCCTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCT 148924 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 |||| ||| ||||| ||||| | ||||| ||||| || | ||| || |||| Sbjct 148923 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 148864 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATA-TGTTTTCATCATTTCACA 41937 || | || | | | || ||||| |||||||| ||||| || ||| | | | || Sbjct 148863 CCTAGTTTCTACCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CA 148805 Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 ||||| || || || || || || | ||| | || || || || || || || Sbjct 148804 GTTCATCCCAATGAGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAAC 148745 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTA 42055 || | || || || || | | | ||| | || ||| || | | ||||| Sbjct 148744 AGCAT-TGATAGT-TATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTG 148687 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||||| || || || | ||| | |||||||||||| ||||| | || |||||| Sbjct 148686 AACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 148627 Query 42116 AA-CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 || |||||| || ||||| |||| | || || ||||| ||||| |||||| | || || Sbjct 148626 AACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACC 148567 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231 | ||||| |||||||||| || |||||| | | | | || || || | | | Sbjct 148566 AAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTC 148507 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 |||| | ||| |||||||| |||||||| || |||||||||| || || Sbjct 148506 TTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTC 148447 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 |||| || |||||| | | | | || || |||||||| ||| || || | | || Sbjct 148446 GATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAG 148387 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 |||| |||| || ||||| |||||||| ||||| || || || || |||||||| | ||| Sbjct 148386 ACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGC 148327 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || || | ||| |||||| | | | | || | || ||||| || ||| | || | Sbjct 148326 TTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAAC 148267 Query 42472 ACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525 ||| | ||||| || ||| ||| || || |||||||| | | || || || | Sbjct 148266 ACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGG-CT 148208 Query 42526 TAATTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 | | ||||| | ||| || || || || | || || ||||| | |||||||| | Sbjct 148207 TCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGG 148148 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 | || || || || ||| |||| | ||| | ||||| || | || ||||| || |||| Sbjct 148147 AAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAA 148088 Query 42645 A 42645 | Sbjct 148087 A 148087 >seq878 Length=898115 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || |||||||||||||||||||| || || ||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 42207 C 42207 | Sbjct 679034 C 679034 >seq348 Length=1658837 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 305568 CTGTTTCTTATACCAT 305553 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| ||||||||||| || |||||| |||| |||| || || ||||| || | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | |||| ||||||||||| ||| ||||||| | |||| | || || |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| || ||||| || || || || ||||||| Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| || || ||||| || || ||||| |||| Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || || || || || || | || | Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 300637 GTTTATTTGA 300628 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 296253 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 296194 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 296193 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 296134 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 296133 TCCAGGTAAATAGC 296120 >seq674 Length=1058379 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| ||||| ||||||| || ||||| | ||||||||||||||| ||||| |||||| | Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979 Query 42622 ATATTGAATTGGGAAAATAACAAATC 42647 ||||| |||||||| || ||||||| Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670999007410360