Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq19 136 6e-27
>seq19
Length=4596781
Score = 136 bits (150), Expect = 6e-27
Identities = 524/811 (65%), Gaps = 28/811 (3%)
Strand=Plus/Minus
Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068
||| | ||| |||||| | ||||| | || ||| |||| ||||||||||| | |||||
Sbjct 3965662 GTACCTTGATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGA 3965603
Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128
||| ||||| ||||||||| | | | ||| | | | |||| ||| || |
Sbjct 3965602 GGTGGATCTTTCCAAGGACATTCAGCACCAGGAATCCCTGAAGCCTGAG---GAGAGATA 3965546
Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTG--CCGGCTCCGATGGAATCGTCAACGACAAT 125186
||| |||| ||| || |||| ||||||| ||| | ||||| || || || || ||
Sbjct 3965545 CTTTCTATCCCACGTTCTGGCTTTCTTTGTGCCGAGT--GATGGCATAGTAAATGAAAAC 3965488
Query 125187 CTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATT 125245
|| || || || ||||| ||| | ||| |||| | || || || || ||
Sbjct 3965487 TTGGTGGAGCGGTTTAGCCAAGAAGTTCAG-ATTACAGAAGCCCGCTGTTTCTATGGCTT 3965429
Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|||||| || || ||| | || || || |||||| | || ||||||| ||| |
Sbjct 3965428 CCAAATTGCCATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACAGTTACGT 3965369
Query 125306 TCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACG 125365
| ||| | || | | | ||||| ||||| || | || |||| | | ||
Sbjct 3965368 TAAAGATTCCGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGTA-- 3965311
Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425
|| ||||| | |||| | | |||| | ||| | || || | |||| || |
Sbjct 3965310 -AAGAAGGCAGACTGGGCCTTGCATTGGACTGGCGACAAAGAGGCTACCTACGGGGAACG 3965252
Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485
| |||| || || || || || || ||||||||||| ||| ||||||| | || ||
Sbjct 3965251 GGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATT 3965192
Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545
||||||||||| |||| || ||||| || |||||| || || |||| |
Sbjct 3965191 CTGGCTCAAGAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTATTAGCAG 3965133
Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605
||| ||||| ||||||||||||||||| || |||| ||| | ||| |||| |
Sbjct 3965132 AGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAACAACTG-GTCCACA 3965077
Query 125606 GTGCAGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664
| || | | | | || || | | || | | ||||||| ||||||| |
Sbjct 3965076 ------AACCTTCCAAGCAGAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGC 3965023
Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724
| | ||| || || || || | || || | | ||| | ||||| |||| | |||||
Sbjct 3965022 AGGGGTTCCTCACGGAGACCTTGCCTGTGAAGCTCATTAGGATGAATTGCACGTTAATGA 3964963
Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGAT 125782
|||| || ||||| |||||||| || || || ||| | | || | ||||| |
Sbjct 3964962 AGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTG--GCAAGGT 3964905
Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATG 125813
|| || | | ||||| ||||| ||||||
Sbjct 3964904 TTTCAGAGTAGAAAATCCATTTGACTTCATG 3964874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740904401996360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |