Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19 136 6e-27 >seq19 Length=4596781 Score = 136 bits (150), Expect = 6e-27 Identities = 524/811 (65%), Gaps = 28/811 (3%) Strand=Plus/Minus Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068 ||| | ||| |||||| | ||||| | || ||| |||| ||||||||||| | ||||| Sbjct 3965662 GTACCTTGATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGA 3965603 Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128 ||| ||||| ||||||||| | | | ||| | | | |||| ||| || | Sbjct 3965602 GGTGGATCTTTCCAAGGACATTCAGCACCAGGAATCCCTGAAGCCTGAG---GAGAGATA 3965546 Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTG--CCGGCTCCGATGGAATCGTCAACGACAAT 125186 ||| |||| ||| || |||| ||||||| ||| | ||||| || || || || || Sbjct 3965545 CTTTCTATCCCACGTTCTGGCTTTCTTTGTGCCGAGT--GATGGCATAGTAAATGAAAAC 3965488 Query 125187 CTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATT 125245 || || || || ||||| ||| | ||| |||| | || || || || || Sbjct 3965487 TTGGTGGAGCGGTTTAGCCAAGAAGTTCAG-ATTACAGAAGCCCGCTGTTTCTATGGCTT 3965429 Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| || || ||| | || || || |||||| | || ||||||| ||| | Sbjct 3965428 CCAAATTGCCATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACAGTTACGT 3965369 Query 125306 TCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACG 125365 | ||| | || | | | ||||| ||||| || | || |||| | | || Sbjct 3965368 TAAAGATTCCGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGTA-- 3965311 Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425 || ||||| | |||| | | |||| | ||| | || || | |||| || | Sbjct 3965310 -AAGAAGGCAGACTGGGCCTTGCATTGGACTGGCGACAAAGAGGCTACCTACGGGGAACG 3965252 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 | |||| || || || || || || ||||||||||| ||| ||||||| | || || Sbjct 3965251 GGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATT 3965192 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||| |||| || ||||| || |||||| || || |||| | Sbjct 3965191 CTGGCTCAAGAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTATTAGCAG 3965133 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 ||| ||||| ||||||||||||||||| || |||| ||| | ||| |||| | Sbjct 3965132 AGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAAACAACTG-GTCCACA 3965077 Query 125606 GTGCAGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | || | | | | || || | | || | | ||||||| ||||||| | Sbjct 3965076 ------AACCTTCCAAGCAGAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGC 3965023 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | | ||| || || || || | || || | | ||| | ||||| |||| | ||||| Sbjct 3965022 AGGGGTTCCTCACGGAGACCTTGCCTGTGAAGCTCATTAGGATGAATTGCACGTTAATGA 3964963 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGAT 125782 |||| || ||||| |||||||| || || || ||| | | || | ||||| | Sbjct 3964962 AGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTG--GCAAGGT 3964905 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATG 125813 || || | | ||||| ||||| |||||| Sbjct 3964904 TTTCAGAGTAGAAAATCCATTTGACTTCATG 3964874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740904401996360