Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq293 100 2e-16
seq975 95.1 9e-15
seq1818 91.5 1e-13
seq371 84.2 2e-11
seq1 82.4 6e-11
>seq293
Length=1771812
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | |||||| || | |||||| ||||| || ||||| ||||||| ||
Sbjct 534100 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGAC 534041
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||| | ||| |||||||| | ||||| | || || || |||
Sbjct 534040 AGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 533981
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||| ||| ||||||| ||||||| ||||| ||| |
Sbjct 533980 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCC 533921
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || ||||| || || | |||||||| || ||||| ||||| ||
Sbjct 533920 TCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871
>seq975
Length=833997
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| || || || ||||| |||||||| ||
Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | || || || |||
Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||| ||| ||||||| ||||||| ||||| ||| ||
Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACC 558667
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 558668 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717
>seq1818
Length=636242
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| || || || ||||| |||||||| ||
Sbjct 433001 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 433060
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | || |||||||| | |||| | || || || |||
Sbjct 433061 AAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 433120
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||| ||| ||||||| ||||||| ||||| ||| ||
Sbjct 433121 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 433180
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 433181 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230
>seq371
Length=1453275
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/230 (68%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| ||||| || ||||| ||| |||| || |
Sbjct 449794 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACAC 449735
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | || |||||| | ||| ||||||| | |||||| | || || || |||
Sbjct 449734 AAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGTGAATATCAGTC--TGCTGATCAGGAGGA 449677
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| |||||| ||| | ||| ||
Sbjct 449676 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAACC 449617
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || ||||| || || | || ||||| |||||||| ||||| ||
Sbjct 449616 TCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTT 449567
>seq1
Length=12736304
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/200 (70%), Gaps = 1/200 (1%)
Strand=Plus/Plus
Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226
|| || || ||||| |||||||| || | | | | | ||||| | ||| ||||||
Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750
Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286
|| | |||| | || || ||| ||||||||||| || || ||| ||| ||||
Sbjct 12236751 GCAAAGATCAGTCTCTGCTGATCGGA-GGAATTCCTTCCTTATCCTGAATCTTGGCCTTT 12236809
Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346
||| ||||||| ||||| ||| || || | ||| ||||| || || || || |||
Sbjct 12236810 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 12236869
Query 15347 TTTACAAAAATTTGCATATT 15366
|| || ||||| ||||| ||
Sbjct 12236870 TTCACGAAAATCTGCATTTT 12236889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362105436660051
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |