Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq293 100 2e-16 seq975 95.1 9e-15 seq1818 91.5 1e-13 seq371 84.2 2e-11 seq1 82.4 6e-11 >seq293 Length=1771812 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||| || | |||||| ||||| || ||||| ||||||| || Sbjct 534100 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGAC 534041 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||| |||||||| | ||||| | || || || ||| Sbjct 534040 AGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 533981 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| ||| ||||||| ||||||| ||||| ||| | Sbjct 533980 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCC 533921 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || | |||||||| || ||||| ||||| || Sbjct 533920 TCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871 >seq975 Length=833997 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| ||| ||||||| ||||||| ||||| ||| || Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACC 558667 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 558668 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 >seq1818 Length=636242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 433001 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 433060 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | || |||||||| | |||| | || || || ||| Sbjct 433061 AAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 433120 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| ||| ||||||| ||||||| ||||| ||| || Sbjct 433121 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 433180 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 433181 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230 >seq371 Length=1453275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/230 (68%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| ||| |||| || | Sbjct 449794 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACAC 449735 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || |||||| | ||| ||||||| | |||||| | || || || ||| Sbjct 449734 AAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGTGAATATCAGTC--TGCTGATCAGGAGGA 449677 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| |||||| ||| | ||| || Sbjct 449676 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAACC 449617 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || | || ||||| |||||||| ||||| || Sbjct 449616 TCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTT 449567 >seq1 Length=12736304 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| |||||||| || | | | | | ||||| | ||| |||||| Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||| | || || ||| ||||||||||| || || ||| ||| |||| Sbjct 12236751 GCAAAGATCAGTCTCTGCTGATCGGA-GGAATTCCTTCCTTATCCTGAATCTTGGCCTTT 12236809 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| ||||||| ||||| ||| || || | ||| ||||| || || || || ||| Sbjct 12236810 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 12236869 Query 15347 TTTACAAAAATTTGCATATT 15366 || || ||||| ||||| || Sbjct 12236870 TTCACGAAAATCTGCATTTT 12236889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362105436660051