Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq512 107 2e-18 >seq512 Length=1279947 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| || || ||| |||| ||||||||| Sbjct 116017 GGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTCTACCTGGAGGAGGTGATG 116076 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || |||| || ||||||| || ||||| ||||| ||||| |||||| Sbjct 116077 CCCCAGGCTGAGAACCACGACCCAAACATCAAGGAACACGTGAACTCCCTGGGGGAAAAG 116136 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| || || Sbjct 116137 CTGAAGACCCTCAGGCTGAGGCTGCGGCGTTG 116168 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 ||| || || |||| || ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 118322 GCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACAT 118381 Query 129152 AGAATCATACATGAC 129166 |||| | |||||||| Sbjct 118382 AGAAACCTACATGAC 118396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447656870538320