Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq293 102 7e-17 seq9145 89.7 4e-13 seq2520 89.7 4e-13 seq975 87.8 2e-12 seq1818 82.4 6e-11 >seq293 Length=1771812 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | |||||||| | |||||| ||| |||||||||| ||||||| |||| Sbjct 534101 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 534042 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | || ||||| ||||| || | | || || | ||||||||| | Sbjct 534041 CAGAGTG-CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAG 533983 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| ||| || ||| | | |||| ||||| | | || | Sbjct 533982 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAG 533923 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || | ||||||||||| |||||||||||| || Sbjct 533922 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTTG 533870 >seq9145 Length=4041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| | |||||||||||||||| |||| ||| || | Sbjct 283 CTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 342 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || ||||| ||||| || | | || | | ||||||||| || | | |||||| Sbjct 343 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 402 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 | | ||| || ||| ||| |||| ||||| | | || ||||| || ||| Sbjct 403 TTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATG 462 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || |||||||| |||||||||||| || Sbjct 463 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 501 >seq2520 Length=369870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| | |||||||||||||||| |||| ||| || | Sbjct 184205 CTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 184146 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || ||||| ||||| || | | || | | ||||||||| || | | |||||| Sbjct 184145 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 184086 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 | | ||| || ||| ||| |||| ||||| | | || ||||| || ||| Sbjct 184085 TTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATG 184026 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || |||||||| |||||||||||| || Sbjct 184025 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 183987 >seq975 Length=833997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || |||||||||||||||||| |||| Sbjct 558487 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 558546 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||| ||||| || | | || | | ||||||||| || Sbjct 558547 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 558606 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | |||| ||||| | | || Sbjct 558607 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAAC 558666 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || || |||||||| ||||||||||| Sbjct 558667 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714 >seq1818 Length=636242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || |||||||||||||||||| |||| Sbjct 433000 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 433059 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||| | ||| || | | || | | ||||||||| || Sbjct 433060 CAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 433119 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | |||| ||||| | | || Sbjct 433120 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 433179 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || || |||||||| ||||||||||| Sbjct 433180 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 433227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421165405742711