Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq258 156 6e-33
seq1057 125 1e-23
>seq258
Length=1842251
Score = 156 bits (172), Expect = 6e-33
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| || || | || ||| ||| |||||||| || |||| || ||||| || |||
Sbjct 697494 GTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCACAGACT 697435
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| ||||| || || ||||||||||| |||||||||||||| || ||
Sbjct 697434 CTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGCCCGAAG 697375
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || ||||| | || | | ||| || | | ||| || |||||||| | |
Sbjct 697374 ACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGGTAGATCATCTCC 697315
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864
||||| ||||||||| | ||| ||||||| || || ||||| | ||||
Sbjct 697314 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCTGA 697264
Score = 134 bits (148), Expect = 2e-26
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 696451 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 696392
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 696391 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 696332
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
||| |||| | || | |||||| ||||||||||| | | | ||| || || |
Sbjct 696331 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAGCTC 696272
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| || |||| || |||||
Sbjct 696271 TTTCTTGCCTGAAAAATGAGAA 696250
>seq1057
Length=891284
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| || || |||| || || ||||| ||||| || |||||||| | || |
Sbjct 883646 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 883705
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | |||||| ||||||||||| |||||||| | || | || |
Sbjct 883706 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 883765
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||| | ||| ||| || ||| |||| | | || | ||| |||||||
Sbjct 883766 TCTCCCCAAAGATAGAGTTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 883825
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| ||||||| ||| || || || | ||||| ||||| ||||| || ||||
Sbjct 883826 AGGCATCGATGTGTCCATACAGCTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCTG 883882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708376798025840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |