Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq293 98.7 9e-16
seq788 95.1 1e-14
seq541 93.3 4e-14
seq377 89.7 5e-13
>seq293
Length=1771812
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 94796 AACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCC 94855
||||| | || | ||| || |||||||| ||| || || || |||| |||
Sbjct 534085 AACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAGAGTGCGTCCATCT 534026
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
||||| || || || ||||||| ||||| |||||||| |||||||| ||||| || ||
Sbjct 534025 TCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 533966
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975
| ||| || ||||| || | | || || | | | || | || | ||||||||
Sbjct 533965 TGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTGATGGTC 533906
Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||||||||||| || ||||||||
Sbjct 533905 TTCCCCATAAGAGTTTTCACGAAAATCTGCAT 533874
>seq788
Length=1000743
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| || || || || || | ||||| || || ||| | ||| ||
Sbjct 445014 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 445073
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||||||| || |||| | | | ||||| || || || || || || ||||| |
Sbjct 445074 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 445133
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||||| || ||||| | | |||||| | | ||||| |||| |||||||| ||
Sbjct 445134 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 445193
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || |||||||||||||||||
Sbjct 445194 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq541
Length=1170729
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | ||| || || || || | ||| ||||| | |||| | ||| |||
Sbjct 610524 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 610583
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || || ||||||| | || ||||| || || || || || ||||| || |
Sbjct 610584 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 610643
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| ||| |||||| | | || || || | |||||||| ||
Sbjct 610644 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 610703
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| |||||||||||
Sbjct 610704 CCGGTCAGGGTCTTCACGAAGATCTGCAT 610732
>seq377
Length=1354867
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| ||| |||| ||||| || || || || || | |||||||||
Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| |||||||| || || ||||||| | || ||||| || || ||
Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || ||||| || | || || ||||| || ||| |||||| | | || ||
Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | | |||||| || || || || || ||||| |||||||||||
Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448197557571960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |