Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq674 89.7 5e-13
seq878 87.8 2e-12
>seq674
Length=1058379
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | |
Sbjct 574006 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 573947
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
|||||| || ||||| ||| || || |||||||| || ||||| || || || |
Sbjct 573946 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 573887
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 573886 CCATAAAATCAAAGGGATTTTC 573865
>seq878
Length=898115
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186
||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| |
Sbjct 680879 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 680820
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
||||| || | ||||| || || || || || ||||| ||||||| ||| ||| ||
Sbjct 680819 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 680760
Query 21247 CATAAAATCAAATGGATTTTC 21267
|||||| ||||||||||||||
Sbjct 680759 CATAAAGTCAAATGGATTTTC 680739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531789692571640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |