Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19 289 4e-73 seq348 131 2e-25 seq878 129 7e-25 seq674 111 2e-19 >seq19 Length=4596781 Score = 289 bits (320), Expect = 4e-73 Identities = 637/949 (67%), Gaps = 38/949 (4%) Strand=Plus/Plus Query 32953 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT-TGAGACATAACTCCCA 33010 ||||| ||| |||||| |||| || | |||| ||| | || | ||||| ||||||| Sbjct 3964755 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCA 3964814 Query 33011 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33070 | | || || ||||| || | ||||| || || || ||||||| ||| |||| Sbjct 3964815 TCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATAT 3964869 Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 33130 | |||||||| ||||| ||||| || | ||| || ||| || | || | Sbjct 3964870 TCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCA 3964929 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 | | || || || ||||| || ||||| ||||| | |||||||| | || | Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || || || | | | | || || || | || || || || |||| ||| Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT------TAA 3965043 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT-----------AAATGTTTAAACAT 33299 || | | || |||||||| || || || | ||||| ||||| Sbjct 3965044 TAATTAT-----TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACAT 3965098 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || || || || || ||||| | |||||| ||||| ||||| ||||| ||||||||||| Sbjct 3965099 CAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGT 3965158 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || || ||||| ||| | || || || ||||| ||||| | || || || |||||||| Sbjct 3965159 CAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAA 3965217 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33476 |||||||||||| || ||||||||| | | || | || || || | | | |||| Sbjct 3965218 GAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTC 3965277 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||| | ||||| || ||||||||| ||||||||||| || | | ||| Sbjct 3965278 GCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATTGTCTGGAGGGC 3965334 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || |||||| | | |||| | ||||||||| ||| | || || | ||||| || Sbjct 3965335 GTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTA 3965394 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || ||||| |||||||| ||||| || || || || |||||||| | || || || Sbjct 3965395 CATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 3965454 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 |||||| |||||| | ||| || ||| |||| |||||||| ||||| || ||||| | Sbjct 3965455 AATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGG 3965514 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC- 33775 |||| || |||| || || || ||| ||| | || || || | || ||||| Sbjct 3965515 CACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCT 3965573 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | | || || || || | ||| || ||||| |||||||||| || ||||| || | Sbjct 3965574 GGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 3965633 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | | |||||| | ||| || ||| || | || ||||| || ||||| Sbjct 3965634 TCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq348 Length=1658837 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 305568 CTGTTTCTTATACCATA 305552 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | |||| ||||||||||| ||| ||||||| | |||| | || || |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 296137 AGGCTCCAGGTAAATAGC 296120 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || || || || || || | ||| | Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 300637 GTTTATTTGA 300628 >seq878 Length=898115 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| || |||||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 33446 C 33446 | Sbjct 679034 C 679034 >seq674 Length=1058379 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| ||||||||||||||||||||||| || || | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| | ||||| || ||||||| ||||||||||||||| ||||| || ||| Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 |||||||||||||| || ||||||| Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || |||| || |||| Sbjct 552684 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAA 552625 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || || | | | || || ||||| | | || ||| || |||| Sbjct 552624 AATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 552574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622817074116760