Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq348 96.9 9e-15
seq878 91.5 4e-13
seq19 91.5 4e-13
>seq348
Length=1658837
Score = 96.9 bits (106), Expect = 9e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| |||||||| || || || |||
Sbjct 297411 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 297470
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || ||| |||||||||| |||| || || || |
Sbjct 297471 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 297530
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
|||||||| || || || || | || || |||
Sbjct 297531 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 297563
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897
||||| |||||||| || || |||||| ||| || |||||||||||||| || |
Sbjct 296111 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTGGATTTA 296170
Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957
||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| ||
Sbjct 296171 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 296230
Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984
| || | || ||||| || ||||||
Sbjct 296231 CCAGATCTCTTCATGAAACGAGTGGAG 296257
>seq878
Length=898115
Score = 91.5 bits (100), Expect = 4e-13
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547
||||| || | || ||||||| || ||||| || ||||||||||| | ||||| | |
Sbjct 679022 GAACGGGTTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTC 679080
Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607
||| || ||||| || ||||| | | ||||| || || |||||||| ||||| | ||
Sbjct 679081 AATATTCTGGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 679140
Query 22608 TAGCCGAGATGAGG 22621
|||| |||||||||
Sbjct 679141 TAGCAGAGATGAGG 679154
>seq19
Length=4596781
Score = 91.5 bits (100), Expect = 4e-13
Identities = 138/190 (73%), Gaps = 6/190 (3%)
Strand=Plus/Minus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGA-TGA--ACAATGAACGTTCATTCGCGGAACGT 22494
|| |||||||| ||||| || | |||| || |||| || | | | || ||||||
Sbjct 3965310 AAGAAGGCAGACTGGGCCTTGCATTGGACTGGCGACAAAGAGGCTACCTACGGGGAACGG 3965251
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAATCTT 22553
|| | | ||||||| || ||||| || ||||||||||| | ||||| | | || ||
Sbjct 3965250 GTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGACGATATT 3965192
Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613
||||| || ||||| | | ||||| || || |||||||| ||||| | |||||| |
Sbjct 3965191 CTGGCTCAAGAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTATTAGCAG 3965133
Query 22614 AGATGAGGGT 22623
||||||||||
Sbjct 3965132 AGATGAGGGT 3965123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303074539368002
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |