Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq348 96.9 9e-15 seq878 91.5 4e-13 seq19 91.5 4e-13 >seq348 Length=1658837 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 297411 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 297470 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 297471 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 297530 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 297531 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 297563 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || |||||||||||||| || | Sbjct 296111 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTGGATTTA 296170 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 296171 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 296230 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 296231 CCAGATCTCTTCATGAAACGAGTGGAG 296257 >seq878 Length=898115 Score = 91.5 bits (100), Expect = 4e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 ||||| || | || ||||||| || ||||| || ||||||||||| | ||||| | | Sbjct 679022 GAACGGGTTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTC 679080 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||| || ||||| || ||||| | | ||||| || || |||||||| ||||| | || Sbjct 679081 AATATTCTGGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 679140 Query 22608 TAGCCGAGATGAGG 22621 |||| ||||||||| Sbjct 679141 TAGCAGAGATGAGG 679154 >seq19 Length=4596781 Score = 91.5 bits (100), Expect = 4e-13 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGA-TGA--ACAATGAACGTTCATTCGCGGAACGT 22494 || |||||||| ||||| || | |||| || |||| || | | | || |||||| Sbjct 3965310 AAGAAGGCAGACTGGGCCTTGCATTGGACTGGCGACAAAGAGGCTACCTACGGGGAACGG 3965251 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAATCTT 22553 || | | ||||||| || ||||| || ||||||||||| | ||||| | | || || Sbjct 3965250 GTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGACGATATT 3965192 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || ||||| | | ||||| || || |||||||| ||||| | |||||| | Sbjct 3965191 CTGGCTCAAGAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTATTAGCAG 3965133 Query 22614 AGATGAGGGT 22623 |||||||||| Sbjct 3965132 AGATGAGGGT 3965123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303074539368002