Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq1818 104 2e-17
seq975 104 2e-17
seq182 86.0 5e-12
seq1 84.2 2e-11
seq788 82.4 6e-11
seq377 82.4 6e-11
>seq1818
Length=636242
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || ||
Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || ||| ||||| ||||| | || ||||
Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| ||||| || | ||| ||||| || | ||||||| || || | || ||
Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||| ||||||||| | ||| | ||||||||| | || || ||
Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 433001
>seq975
Length=833997
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || |
Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || ||| ||||| ||||| | || ||||
Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| ||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||| ||||||||| | ||| | ||||||||| | || || ||
Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 558488
>seq182
Length=1985155
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|| ||||| ||||| | ||||| || ||||| || ||||| | | | || | || ||
Sbjct 1379205 AAGATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCC 1379146
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
| || | | | | ||| | || ||| ||||| ||||| | || ||||
Sbjct 1379145 TCGGGTACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 1379086
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| ||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 1379085 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTAC 1379026
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||| ||||||||| | ||| | ||||||||| | || || ||
Sbjct 1379025 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1378976
>seq1
Length=12736304
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/201 (70%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || ||
Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || ||| ||||| ||||| | || |||
Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GAT 12236771
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| ||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711
Query 115463 AACATTCAAAAAGAGTCTACT 115483
||||||||||| |||||||||
Sbjct 12236710 AACATTCAAAAGGAGTCTACT 12236690
>seq788
Length=1000743
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||| || || || ||||| || ||||| ||| | || ||| ||||
Sbjct 445223 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 445164
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
||||| ||| | || ||| ||||| || || || ||| |||| ||| |||
Sbjct 445163 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 445104
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
|| | || ||| |||||||||||| | ||||||| | || || | || |||||
Sbjct 445103 CAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAAT 445044
Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495
|| || |||||||| || | || |||||
Sbjct 445043 ATCCAGAAAGAGTCCACCCTGCACTTGGTG 445014
>seq377
Length=1354867
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| || || || || || || || || || ||||| || | || |||| ||
Sbjct 824632 AAAATGCAGATCTTCGTGAAGACCCTAACCGGCAAGACCATCCCCCTGGAGGTGGAGCCC 824573
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| ||||| | | | | || || || || |||||||| ||| ||||| |||
Sbjct 824572 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGAC 824513
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| || || || | ||| ||||| || | ||||||| | || | | ||||||
Sbjct 824512 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAT 824453
Query 115463 AACATTCAAAAAGAGTCTAC 115482
||||| || |||||||| ||
Sbjct 824452 AACATCCAGAAAGAGTCGAC 824433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425257372181320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |