Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq788 96.9 3e-15
seq541 95.1 1e-14
seq377 87.8 1e-12
>seq788
Length=1000743
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| ||||| |||||||| || || || || ||||| | |
Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || |||| |||||||||||| ||| || ||||| ||||| ||
Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || ||| || || | | | ||||| | ||||||
Sbjct 445117 ATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCAATGGTGTCACTGGGCTCGA 445174
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || ||||| || || ||||| ||||||||
Sbjct 445175 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq541
Length=1170729
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || ||||| || || |||||||| || | | || | | ||
Sbjct 610521 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 610580
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || |||| ||| ||||| || | ||||||||| ||
Sbjct 610581 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 610640
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | ||||| | ||||||| |||| ||||||||
Sbjct 610641 TGGATCTTGGC--CTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 610698
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
| || |||||||| || || || || ||||||||||||
Sbjct 610699 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 610736
>seq377
Length=1354867
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| || ||||| || || ||||| || || | | || | | ||
Sbjct 824417 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATC 824476
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| ||| | || |||| ||| ||||| || | ||||||||| ||
Sbjct 824477 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 824536
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | ||||||| |||| || ||||
Sbjct 824537 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATG 824594
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || ||||| || || || || || ||||||||||||
Sbjct 824595 GTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 824633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405005497625890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |