Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1641 118 7e-22 seq975 114 9e-21 seq630 113 3e-20 seq9145 111 1e-19 seq2520 111 1e-19 seq1818 105 4e-18 seq1 100 2e-16 seq2797 86.0 4e-12 seq371 86.0 4e-12 seq293 86.0 4e-12 seq182 84.2 1e-11 >seq1641 Length=668455 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 354714 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 354655 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||| ||||||||||||||| Sbjct 354654 TCATCCATTCATGCGGGTCGCTAATTAGATGACGA 354620 >seq975 Length=833997 Score = 114 bits (126), Expect = 9e-21 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || || Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAG 38283 | ||| || ||| ||||| | | ||||| | || |||||| || | || || | Sbjct 558622 CTGAATCTTGGCCTTTACATTTTCTATTGTATC-CGACGGTTCAACCTCGAGGGTGATGG 558680 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||||| | |||||||||||| |||||||| || Sbjct 558681 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 >seq630 Length=1120681 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| | || |||||||| ||||| || |||||||| Sbjct 870512 AAGCCCGTTCCCTTGGCTGTGGTTCCTCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 870571 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 870572 TCATCCATTCATGCGCATCACTAATTAGATGACGA 870606 >seq9145 Length=4041 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| | |||||||||| ||||| ||||||||| |||| | || Sbjct 285 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 344 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || | Sbjct 345 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 404 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||| || ||| | ||| | | |||||| |||||| || | || || || Sbjct 405 CTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGT 464 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 465 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 500 >seq2520 Length=369870 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| | |||||||||| ||||| ||||||||| |||| | || Sbjct 184203 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 184144 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || | Sbjct 184143 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 184084 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||| || ||| | ||| | | |||||| |||||| || | || || || Sbjct 184083 CTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGT 184024 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 184023 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 183988 >seq1818 Length=636242 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 433015 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 433074 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 433075 TTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 433134 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||| || ||| ||||| | | ||||| |||||| || | || || || Sbjct 433135 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 433194 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 433195 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230 >seq1 Length=12736304 Score = 100 bits (110), Expect = 2e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| ||||||||| ||| | || || | ||| || || ||||| Sbjct 12236696 CTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAA 12236755 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | || |||||||| || | ||||| || ||| ||| || ||| ||||| Sbjct 12236756 GATCAGTCTCTGCTGATCGGA-GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATT 12236814 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||||| |||||| || | || || || || ||||| | ||||||||| Sbjct 12236815 TTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAC 12236874 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 12236875 GAAAATCTGCATTTT 12236889 >seq2797 Length=342856 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||| |||||| |||||||||||| || |||||||| ||||| || | ||| || Sbjct 204314 AAACCCATTCCCTGGGCTGTGGTTTCACTGGATAGTAGGTAGGGATAGTGGGACTCTTGT 204373 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| | ||||||||||||||||| || Sbjct 204374 TCATCCATTCATACACGTCACTAATTAGATGATGA 204408 >seq371 Length=1453275 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| |||| ||| ||||| || ||| Sbjct 449780 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACACAAAGTTTGTCTGTC 449721 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || | ||||| || | || ||||| | || | ||||| || || Sbjct 449720 TTCCAGTTGCTTGCCAGTGAATATCAGTC--TGCTGATCAGGAGGAATTCCTTCCTTATC 449663 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | || ||| || |||||| || | || || || Sbjct 449662 CTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAACCTCGAGAGTGATGGT 449603 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | ||||||||| || |||||||| || Sbjct 449602 CTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTT 449567 >seq293 Length=1771812 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 ||||| | |||||||||| |||||||||| | ||||| ||||||| | ||| | || Sbjct 534085 AACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAGAGTGCGTCCATCT 534026 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||| || || ||||| || | | || ||||| | || | ||||| || ||| Sbjct 534025 TCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 533966 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| ||||| | | ||||| |||| | || | || || || Sbjct 533965 TGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTGATGGTC 533906 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | ||||||||||| |||||||| || Sbjct 533905 TTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871 >seq182 Length=1985155 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| ||||| ||||||||| | | | || Sbjct 1378990 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATC 1379049 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || || Sbjct 1379050 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1379109 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||| || || ||||| | | ||| | |||| | || | | || || Sbjct 1379110 CTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGGT 1379169 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||| ||| |||||||| || Sbjct 1379170 CTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334878982873841