Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq19 279 6e-70
seq3332 235 7e-57
seq348 131 2e-25
seq878 123 3e-23
seq674 107 2e-18
>seq19
Length=4596781
Score = 279 bits (308), Expect = 6e-70
Identities = 425/600 (71%), Gaps = 9/600 (2%)
Strand=Plus/Plus
Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705
||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | |||
Sbjct 3965088 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 3965147
Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765
||||||||||| || || ||||| ||| | || || || ||||| ||||| | ||||||
Sbjct 3965148 TTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAA 3965206
Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 32822
|| ||||||||||| |||||||| || || |||||| | | || | || || || |
Sbjct 3965207 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 3965266
Query 32823 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882
| | |||| |||| | ||||| || ||||||||| ||||||||||||
Sbjct 3965267 GCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATT 3965323
Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942
|||| | || || |||||| | | |||| | ||||||||| || | |||||
Sbjct 3965324 GTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383
Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002
| ||||| ||||| || ||||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443
Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062
| || || |||||||| |||||| | ||| || || | || |||||||| |||||
Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503
Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122
|| ||||| | |||| || |||| || || || ||| ||| | || || || |
Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 3965563
Query 33123 AGTTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181
|| ||||| | | || || || || | |||||| ||||| |||||||||| ||
Sbjct 3965564 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 3965622
Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
||||| || || | |||||| | ||| || ||| | || | | || || || |||||
Sbjct 3965623 AGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq3332
Length=249688
Score = 235 bits (260), Expect = 7e-57
Identities = 420/607 (69%), Gaps = 12/607 (2%)
Strand=Plus/Minus
Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705
||||| ||||||| || || || | ||||| |||||| ||||| ||||| | ||
Sbjct 148692 TGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 148633
Query 32706 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764
||||||||| ||||| || ||||| |||| | || || ||||| ||||| |||||| |
Sbjct 148632 TTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGA 148573
Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 32821
|| ||| ||||| | |||||||| || |||||| | | | | || || ||
Sbjct 148572 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGT 148513
Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881
| | | |||| | ||| |||||||| |||||||| || ||||||||||
Sbjct 148512 AGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCAT 148453
Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941
|||||| || | || |||||| | | | | || || |||||||| ||| || ||| |
Sbjct 148452 TGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGT 148393
Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001
| |||||| |||| || ||||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 148392 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 148333
Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061
| || || || ||||| |||||| | | | | || | || |||||||| ||| |
Sbjct 148332 GCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGT 148273
Query 33062 TCCGTCACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTC 33115
|| |||| | ||||| || ||| ||| || || |||||||| | | || ||
Sbjct 148272 GCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTC 148213
Query 33116 TGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCC 33174
|| | || ||||| | ||| || || || || | || ||| ||||| ||||||
Sbjct 148212 AGGCTTCAG-CGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCC 148154
Query 33175 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 33234
|||| || ||||| || || ||| |||| | ||| | |||||| || | || || || |
Sbjct 148153 AAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGA 148094
Query 33235 TAACAAA 33241
| |||||
Sbjct 148093 TGACAAA 148087
>seq348
Length=1658837
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 305568 CTGTTTCTTATACCATA 305552
Score = 129 bits (142), Expect = 7e-25
Identities = 131/171 (77%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
|||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
||| |||||| |||||||| ||||| || || || || || ||||| || | || || |
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087
| |||| ||||||||||| ||| ||||||| | |||| | || || ||||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201
Score = 104 bits (114), Expect = 3e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758
Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549
||||||||||||| ||||||| |||||| || || ||||| | || ||||| ||||
Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698
Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609
| | | |||||||| || ||||| | ||||| || || || || || || | ||| |
Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638
Query 62610 TCTTATTAGA 62619
||||| ||
Sbjct 300637 GTTTATTTGA 300628
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198
Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138
Query 63187 CGGTTCCAAGTATATGGC 63204
|| |||| ||| || ||
Sbjct 296137 AGGCTCCAGGTAAATAGC 296120
Score = 98.7 bits (108), Expect = 1e-15
Identities = 132/182 (73%), Gaps = 5/182 (3%)
Strand=Plus/Minus
Query 63797 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853
||||||| |||| |||| || | ||| |||||||||||||| | || || |||||
Sbjct 282591 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 282534
Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913
|| || || || || |||||||| || ||||| | || || | || || ||| | ||
Sbjct 282533 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCA 282474
Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973
|| |||| ||| || | ||| || || || || ||| | |||| |||||||| || |||
Sbjct 282473 GCAGCCAAAGTATCTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTC 282414
Query 63974 AT 63975
||
Sbjct 282413 AT 282412
>seq878
Length=898115
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 32803 C 32803
|
Sbjct 679034 C 679034
>seq674
Length=1058379
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| ||||| || || | ||| ||||||||||||||||||||||| || || | || ||
Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803
||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| ||
Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130
Score = 82.4 bits (90), Expect = 1e-10
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218
|| ||||| | ||||| || ||||||| ||||||||||||||| ||||| || ||| |
Sbjct 547037 ACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGGG 546978
Query 33219 TATTGAATTGGAAAAATAACAAATC 33243
||||| ||||| || || |||||||
Sbjct 546977 TATTGGATTGGGAAGATGACAAATC 546953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633499642195600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |