Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19 279 6e-70 seq3332 235 7e-57 seq348 131 2e-25 seq878 123 3e-23 seq674 107 2e-18 >seq19 Length=4596781 Score = 279 bits (308), Expect = 6e-70 Identities = 425/600 (71%), Gaps = 9/600 (2%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | ||| Sbjct 3965088 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 3965147 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||||||||||| || || ||||| ||| | || || || ||||| ||||| | |||||| Sbjct 3965148 TTGGAAAACGTCAG-CCAGGCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAA 3965206 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 32822 || ||||||||||| |||||||| || || |||||| | | || | || || || | Sbjct 3965207 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 3965266 Query 32823 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 | | |||| |||| | ||||| || ||||||||| |||||||||||| Sbjct 3965267 GCCTCTTTGTCGCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTT---ACACAAGGCATT 3965323 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 |||| | || || |||||| | | |||| | ||||||||| || | ||||| Sbjct 3965324 GTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATG 3965383 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | ||||| ||||| || ||||| |||||||| ||||| ||||| || || ||||| || Sbjct 3965384 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 3965443 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | || || |||||||| |||||| | ||| || || | || |||||||| ||||| Sbjct 3965444 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 3965503 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || ||||| | |||| || |||| || || || ||| ||| | || || || | Sbjct 3965504 CCATCACTCGGCACAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 3965563 Query 33123 AGTTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 || ||||| | | || || || || | |||||| ||||| |||||||||| || Sbjct 3965564 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 3965622 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| || || | |||||| | ||| || ||| | || | | || || || ||||| Sbjct 3965623 AGCCTCAGCTTTCTCATACATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 235 bits (260), Expect = 7e-57 Identities = 420/607 (69%), Gaps = 12/607 (2%) Strand=Plus/Minus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| ||||||| || || || | ||||| |||||| ||||| ||||| | || Sbjct 148692 TGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 148633 Query 32706 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 ||||||||| ||||| || ||||| |||| | || || ||||| ||||| |||||| | Sbjct 148632 TTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGA 148573 Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 32821 || ||| ||||| | |||||||| || |||||| | | | | || || || Sbjct 148572 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGT 148513 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | | | |||| | ||| |||||||| |||||||| || |||||||||| Sbjct 148512 AGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCAT 148453 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 |||||| || | || |||||| | | | | || || |||||||| ||| || ||| | Sbjct 148452 TGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGT 148393 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 | |||||| |||| || ||||| |||||||| ||||| ||||| || || ||||| || Sbjct 148392 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 148333 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 | || || || ||||| |||||| | | | | || | || |||||||| ||| | Sbjct 148332 GCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGT 148273 Query 33062 TCCGTCACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTC 33115 || |||| | ||||| || ||| ||| || || |||||||| | | || || Sbjct 148272 GCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTC 148213 Query 33116 TGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCC 33174 || | || ||||| | ||| || || || || | || ||| ||||| |||||| Sbjct 148212 AGGCTTCAG-CGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCC 148154 Query 33175 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 33234 |||| || ||||| || || ||| |||| | ||| | |||||| || | || || || | Sbjct 148153 AAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGA 148094 Query 33235 TAACAAA 33241 | ||||| Sbjct 148093 TGACAAA 148087 >seq348 Length=1658837 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 305688 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 305629 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 305628 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 305569 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 305568 CTGTTTCTTATACCATA 305552 Score = 129 bits (142), Expect = 7e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| |||||| |||||||| ||||| || || || || || ||||| || | || || | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | |||| ||||||||||| ||| ||||||| | |||| | || || |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 300817 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 300758 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 300757 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 300698 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 300697 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 300638 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 300637 GTTTATTTGA 300628 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 296257 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 296198 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 296197 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 296138 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 296137 AGGCTCCAGGTAAATAGC 296120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 63797 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 ||||||| |||| |||| || | ||| |||||||||||||| | || || ||||| Sbjct 282591 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 282534 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913 || || || || || |||||||| || ||||| | || || | || || ||| | || Sbjct 282533 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCA 282474 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973 || |||| ||| || | ||| || || || || ||| | |||| |||||||| || ||| Sbjct 282473 GCAGCCAAAGTATCTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTC 282414 Query 63974 AT 63975 || Sbjct 282413 AT 282412 >seq878 Length=898115 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 32803 C 32803 | Sbjct 679034 C 679034 >seq674 Length=1058379 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 558130 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| | ||||| || ||||||| ||||||||||||||| ||||| || ||| | Sbjct 547037 ACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGGG 546978 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 ||||| ||||| || || ||||||| Sbjct 546977 TATTGGATTGGGAAGATGACAAATC 546953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633499642195600