Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq19 215 6e-51 seq3332 197 2e-45 seq878 96.9 4e-15 >seq19 Length=4596781 Score = 215 bits (238), Expect = 6e-51 Identities = 457/671 (68%), Gaps = 11/671 (2%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| | ||||| || |||| ||||| || || | | ||| |||| | ||| || Sbjct 3965049 ATTTCCTTCACTCT-CTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGC 3965107 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| |||||||| || |||| || || || | ||||| || || | || | Sbjct 3965108 AAAGTCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTCAG-CCAG 3965165 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||| | |||||||||||||| ||||| | |||||| ||||||||| || || | Sbjct 3965166 GCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTC 3965225 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| || ||||| |||||| ||||| | | | || || || ||| Sbjct 3965226 CTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCC 3965285 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | | || ||||| || || || ||| | |||||| | ||| | || ||||| || | Sbjct 3965286 AATGCAAGGCCCAGTCTGCCTT---CTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGA 3965342 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || | || || |||||| | ||| | || || | ||| ||||| |||| Sbjct 3965343 GAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAG 3965402 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||||| || ||||| ||||||||||| || |||||||| | ||||| || ||||| | Sbjct 3965403 AATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 3965462 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||| | ||| || | |||||||| ||||| ||||| | |||| | Sbjct 3965463 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGA 3965522 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| | || || ||| | | |||| ||| || || ||| | | || Sbjct 3965523 AAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGA- 3965581 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || |||||||| || ||||| | |||||||| || || || ||||| | ||| Sbjct 3965582 ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATAC 3965641 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694 || | ||| || || | || | | || || |||||||| ||| |||||| ||| | Sbjct 3965642 ATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAAGCGA-CAGGGTTTTCTCTC 3965700 Query 93695 AGTAACGGCTC 93705 |||| ||||| Sbjct 3965701 AGTAGTGGCTC 3965711 >seq3332 Length=249688 Score = 197 bits (218), Expect = 2e-45 Identities = 438/652 (67%), Gaps = 9/652 (1%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| || || | | ||| |||| | ||| ||||||| |||||||| || ||| Sbjct 148707 GGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCT 148648 Query 93122 CGTGATATCAA-CTCATTGCTGAAT-GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 | || || || ||||||| || || | || || | ||| | | ||||||||||| Sbjct 148647 C-TGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCC 148589 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || ||| || |||| |||| | || |||||| ||| ||||| ||||| Sbjct 148588 AGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAT 148529 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299 | ||| | | | || || | | ||| || |||||||| || || | Sbjct 148528 CCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCT 148469 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 || | |||||| | ||| ||||| | ||| || || | ||| ||| | |||||| Sbjct 148468 TCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTT 148409 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 || || || || | | ||| | |||| |||||||||| || ||||| ||||||| Sbjct 148408 TAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTT 148349 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || |||||||| | ||||| || ||||| |||||||| | | | ||| || | Sbjct 148348 GGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCA 148289 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG--CTT----TA 93533 |||||||| ||| | ||| | | ||||| ||||||| || || | | || Sbjct 148288 AGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTA 148229 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 |||||| | |||| ||| || ||| ||||| | | || || ||||||| | Sbjct 148228 TAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCA 148169 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 | ||||| | |||||||| || || || ||||| || |||| | ||| | ||| || | Sbjct 148168 CCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGT 148109 Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | | || || || |||||||| ||| |||||| ||| | |||| ||||| Sbjct 148108 ACTTCATAGGGAAGATGACAAAGCGAAGAGGGTTTTCTGTCAGTAGGGGCTC 148057 >seq878 Length=898115 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| |||||||| ||| Sbjct 679134 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTGAGCCAGAATATTGACGCA 679075 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| ||||||| ||||| Sbjct 679074 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTTC 679022 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| || || || || || | ||| ||||| |||||||||| || ||||| Sbjct 677128 GAATCTTTAATATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATG 677069 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 677068 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 677019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556744478739640