Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq19 215 6e-51
seq3332 197 2e-45
seq878 96.9 4e-15
>seq19
Length=4596781
Score = 215 bits (238), Expect = 6e-51
Identities = 457/671 (68%), Gaps = 11/671 (2%)
Strand=Plus/Plus
Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
||||| | ||||| || |||| ||||| || || | | ||| |||| | ||| ||
Sbjct 3965049 ATTTCCTTCACTCT-CTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGC 3965107
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155
|||||| |||||||| || |||| || || || | ||||| || || | || |
Sbjct 3965108 AAAGTCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTCAG-CCAG 3965165
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | ||| | |||||||||||||| ||||| | |||||| ||||||||| || || |
Sbjct 3965166 GCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTC 3965225
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
||||||| || ||||| |||||| ||||| | | | || || || |||
Sbjct 3965226 CTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCC 3965285
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| | || ||||| || || || ||| | |||||| | ||| | || ||||| || |
Sbjct 3965286 AATGCAAGGCCCAGTCTGCCTT---CTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGA 3965342
Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
| | || | || || |||||| | ||| | || || | ||| ||||| ||||
Sbjct 3965343 GAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAG 3965402
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
|||||| || ||||| ||||||||||| || |||||||| | ||||| || ||||| |
Sbjct 3965403 AATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 3965462
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
||||||| ||| | ||| || | |||||||| ||||| ||||| | |||| |
Sbjct 3965463 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGA 3965522
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574
|||||| | || || ||| | | |||| ||| || || ||| | | ||
Sbjct 3965523 AAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGA- 3965581
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| || || |||||||| || ||||| | |||||||| || || || ||||| | |||
Sbjct 3965582 ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATAC 3965641
Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694
|| | ||| || || | || | | || || |||||||| ||| |||||| ||| |
Sbjct 3965642 ATCTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAAGCGA-CAGGGTTTTCTCTC 3965700
Query 93695 AGTAACGGCTC 93705
|||| |||||
Sbjct 3965701 AGTAGTGGCTC 3965711
>seq3332
Length=249688
Score = 197 bits (218), Expect = 2e-45
Identities = 438/652 (67%), Gaps = 9/652 (1%)
Strand=Plus/Minus
Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121
||||| || || | | ||| |||| | ||| ||||||| |||||||| || |||
Sbjct 148707 GGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCT 148648
Query 93122 CGTGATATCAA-CTCATTGCTGAAT-GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179
| || || || ||||||| || || | || || | ||| | | |||||||||||
Sbjct 148647 C-TGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCC 148589
Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239
| ||||| || ||| || |||| |||| | || |||||| ||| ||||| |||||
Sbjct 148588 AGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAT 148529
Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299
| ||| | | | || || | | ||| || |||||||| || || |
Sbjct 148528 CCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCT 148469
Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359
|| | |||||| | ||| ||||| | ||| || || | ||| ||| | ||||||
Sbjct 148468 TCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTT 148409
Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419
|| || || || | | ||| | |||| |||||||||| || ||||| |||||||
Sbjct 148408 TAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTT 148349
Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479
|||| || |||||||| | ||||| || ||||| |||||||| | | | ||| || |
Sbjct 148348 GGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCA 148289
Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG--CTT----TA 93533
|||||||| ||| | ||| | | ||||| ||||||| || || | | ||
Sbjct 148288 AGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTA 148229
Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593
|||||| | |||| ||| || ||| ||||| | | || || ||||||| |
Sbjct 148228 TAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCA 148169
Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653
| ||||| | |||||||| || || || ||||| || |||| | ||| | ||| || |
Sbjct 148168 CCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGT 148109
Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705
| | || || || |||||||| ||| |||||| ||| | |||| |||||
Sbjct 148108 ACTTCATAGGGAAGATGACAAAGCGAAGAGGGTTTTCTGTCAGTAGGGGCTC 148057
>seq878
Length=898115
Score = 96.9 bits (106), Expect = 4e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| || || | || || | ||| || |||||||||||||| |||||||| |||
Sbjct 679134 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTGAGCCAGAATATTGACGCA 679075
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||||||||| || || |||||||| || ||||| ||||||| |||||
Sbjct 679074 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTTC 679022
Score = 82.4 bits (90), Expect = 8e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| || || || || || | ||| ||||| |||||||||| || |||||
Sbjct 677128 GAATCTTTAATATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATG 677069
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
||||||||||| || |||||||| | ||||| || ||||| ||||||||
Sbjct 677068 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 677019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556744478739640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |