Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq788 111 1e-19
seq9145 98.7 8e-16
seq2520 98.7 8e-16
seq1818 93.3 4e-14
seq975 93.3 4e-14
seq1 87.8 2e-12
seq203 86.0 5e-12
seq541 82.4 6e-11
>seq788
Length=1000743
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || || || |||| ||||| || || |||
Sbjct 445225 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 445166
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| ||||| |||||||||||||| || || || || |
Sbjct 445165 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACC 445106
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| | ||||| ||||||||| | || ||| ||| || | || || || |
Sbjct 445105 AGCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATA 445046
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427
| || || ||||| |||||| | || || ||
Sbjct 445045 ATATCCAGAAAGAGTCCACCCTGCACTTGGT 445015
>seq9145
Length=4041
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || ||||| | || || || || ||||||| || || ||| ||
Sbjct 500 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 441
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || |||| || || ||||| | ||||| || ||||| || |||
Sbjct 440 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 381
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || ||||| ||||| || | || ||| || || | || || |||
Sbjct 380 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 321
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434
||||||||||| | ||||| | ||| | || ||| ||
Sbjct 320 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 282
>seq2520
Length=369870
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || ||||| | || || || || ||||||| || || ||| ||
Sbjct 183988 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 184047
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || |||| || || ||||| | ||||| || ||||| || |||
Sbjct 184048 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 184107
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || ||||| ||||| || | || ||| || || | || || |||
Sbjct 184108 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 184167
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434
||||||||||| | ||||| | ||| | || ||| ||
Sbjct 184168 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 184206
>seq1818
Length=636242
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| ||||| || ||||| | || || || || |||| || || || ||| ||
Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || ||||| || ||||| || ||||| || |||
Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || ||||| ||||| | | || ||| ||||| | || || |||
Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || || || | ||| | || ||| || | || || |||
Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 433000
>seq975
Length=833997
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| ||||| || ||||| | || || || || |||| || || || ||| |
Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || ||||| || ||||| || ||||| || |||
Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || ||||| ||||| || | || ||| ||||| | || || |||
Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || || || | ||| | || ||| || | || || |||
Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 558487
>seq1
Length=12736304
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/200 (70%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| ||||| || ||||| | || || || || |||| || || || ||| ||
Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || ||||| || ||||| || ||||| || |||
Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GAT 12236771
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || ||||| ||||| || | || ||| ||||| | || || |||
Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711
Query 22396 AACATTCAAAAAGAATCCAC 22415
||||||||||| || || ||
Sbjct 12236710 AACATTCAAAAGGAGTCTAC 12236691
>seq203
Length=1941613
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/211 (69%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || || || || | || || || | |||| || || || || |||
Sbjct 1856183 AGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGAACATCACCCTCGAGGTTGAGCCCA 1856124
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| ||||| ||||||||||||| || || || || |
Sbjct 1856123 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGACATCCCGCCTGACC 1856064
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || ||||| ||||||||| | || | | ||| ||| | || || || |
Sbjct 1856063 AGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGCTGGCCGTACCCTGTCAGACTATA 1856004
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427
| || | | ||| |||||| | || || ||
Sbjct 1856003 ATATCC--AGAGAGTCCACCCTGCACTTGGT 1855975
>seq541
Length=1170729
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || ||||| || || || || || | ||||| || || |||| || || |||||
Sbjct 610738 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 610679
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| || ||| | || | | || || || ||||| || ||||| || || ||
Sbjct 610678 CCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCT 610619
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || | || || ||||| ||||| ||| | || ||| |||||| | || |||
Sbjct 610618 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 610559
Query 22393 TACAACATTCAAAAAGAATCCAC 22415
|||||||| || ||||| || ||
Sbjct 610558 TACAACATCCAGAAAGAGTCAAC 610536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419642515965715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |