Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq788 111 1e-19 seq9145 98.7 8e-16 seq2520 98.7 8e-16 seq1818 93.3 4e-14 seq975 93.3 4e-14 seq1 87.8 2e-12 seq203 86.0 5e-12 seq541 82.4 6e-11 >seq788 Length=1000743 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 445225 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 445166 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || || || || | Sbjct 445165 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACC 445106 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| | ||||| ||||||||| | || ||| ||| || | || || || | Sbjct 445105 AGCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATA 445046 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || || ||||| |||||| | || || || Sbjct 445045 ATATCCAGAAAGAGTCCACCCTGCACTTGGT 445015 >seq9145 Length=4041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || ||||||| || || ||| || Sbjct 500 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 441 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || |||| || || ||||| | ||||| || ||||| || ||| Sbjct 440 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 381 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 380 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 321 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| | ||||| | ||| | || ||| || Sbjct 320 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 282 >seq2520 Length=369870 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || ||||||| || || ||| || Sbjct 183988 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 184047 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || |||| || || ||||| | ||||| || ||||| || ||| Sbjct 184048 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 184107 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 184108 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 184167 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| | ||||| | ||| | || ||| || Sbjct 184168 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 184206 >seq1818 Length=636242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| | || || || || |||| || || || ||| || Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || ||||| || ||||| || ||||| || ||| Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| | | || ||| ||||| | || || ||| Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || || | ||| | || ||| || | || || ||| Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 433000 >seq975 Length=833997 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| | || || || || |||| || || || ||| | Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || ||||| || ||||| || ||||| || ||| Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| || | || ||| ||||| | || || ||| Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || || | ||| | || ||| || | || || ||| Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 558487 >seq1 Length=12736304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| | || || || || |||| || || || ||| || Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || ||||| || ||||| || ||||| || ||| Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GAT 12236771 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| || | || ||| ||||| | || || ||| Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| || || || Sbjct 12236710 AACATTCAAAAGGAGTCTAC 12236691 >seq203 Length=1941613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | || || || | |||| || || || || ||| Sbjct 1856183 AGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGAACATCACCCTCGAGGTTGAGCCCA 1856124 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| ||||||||||||| || || || || | Sbjct 1856123 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGACATCCCGCCTGACC 1856064 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| ||||||||| | || | | ||| ||| | || || || | Sbjct 1856063 AGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGCTGGCCGTACCCTGTCAGACTATA 1856004 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || | | ||| |||||| | || || || Sbjct 1856003 ATATCC--AGAGAGTCCACCCTGCACTTGGT 1855975 >seq541 Length=1170729 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 610738 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 610679 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || ||||| || ||||| || || || Sbjct 610678 CCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCT 610619 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 610618 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 610559 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || ||||| || || Sbjct 610558 TACAACATCCAGAAAGAGTCAAC 610536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419642515965715