Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq541 163 5e-35 seq377 161 2e-34 seq788 149 1e-30 seq322 134 3e-26 seq203 127 4e-24 seq176 125 1e-23 seq457 95.1 2e-14 seq1309 87.8 3e-12 seq2277 84.2 4e-11 seq1676 84.2 4e-11 >seq541 Length=1170729 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 610524 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 610583 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || || ||||| || || ||||| Sbjct 610584 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 610643 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| ||||||||||| | || || |||| ||||||||| || Sbjct 610644 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 610703 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| ||||||||| || Sbjct 610704 CCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 610736 >seq377 Length=1354867 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||| ||| |||| ||| || || |||||||| |||||||||||||| || || || | Sbjct 824412 AGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGG 824471 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || ||||| || || ||||| || Sbjct 824472 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 824531 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||| || ||||||||||| | || || |||| || | Sbjct 824532 TTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGG 824591 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || || || |||||||| ||||| ||||||||| || Sbjct 824592 ATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 824633 >seq788 Length=1000743 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || ||||||||||| ||||| ||||| || || Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || | || | || ||||| || || Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || || ||||| ||| |||||||| | || || Sbjct 445117 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 445176 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 445177 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq322 Length=1513654 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| ||||| || || || || | ||||||||| Sbjct 277541 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCT 277482 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || | || | || ||||| || || ||||| |||| |||||| Sbjct 277481 AGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGG 277422 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| ||||||| | || || | || ||||||||| || Sbjct 277421 ATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCT-CAGGGTGATGGTCTTG 277363 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||||||| Sbjct 277362 CCTGTGAGGGTCTTCACAAAGATCTGCAT 277334 >seq203 Length=1941613 Score = 127 bits (140), Expect = 4e-24 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||| | |||| ||||| || || || || | ||| |||| Sbjct 1855975 ACCAAGTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTCC 1856032 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || | || ||||| || || ||| | ||||||||||| Sbjct 1856033 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGG 1856092 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| |||||||| | || || || | ||||||| | || Sbjct 1856093 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTG 1856152 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| |||||||| Sbjct 1856153 CCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq176 Length=2148545 Score = 125 bits (138), Expect = 1e-23 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||||||| |||||||| ||||| || || || | |||||||| Sbjct 212429 ACCAGGTG-AGAGTCAACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 212371 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG-TCTTG 68371 | |||||| | ||| || ||||| || | ||||| | || ||||| ||||| || || Sbjct 212370 AGCTGCTTGCTGGCAAAGATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATCCTG 212311 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || ||||||||||| | || || |||| ||||||||| || Sbjct 212310 GATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 212251 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || |||||||| | ||| ||||||||| Sbjct 212250 GCTGGTCAGGGTCTTCATGAAGATCTGCATT 212220 >seq457 Length=1382432 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| ||| | | | || ||||| | | Sbjct 946305 AGGCGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGCTACTGTGGTCTGAGAGAGCGCGG 946246 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||| || || || || | || || ||||| || || ||||| || Sbjct 946245 CCATCCTCCAGCTGTTTGCCCGCAAAGGTCAGATGCTGCTGGTCAGGAGGGATGCCCTCT 946186 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| | || || |||| || |||| ||||||| | || || |||| |||| Sbjct 946185 TTGTCTTGGGTTTTGGCTTTGATGGTCTCGGTGGTGTCACTGGGCTCAACCTCCAGGGTG 946126 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 |||| || ||| | |||||||| || || |||| Sbjct 946125 CTGGTCTTGCCCCTCAGGGTCTTCACAAAGGTCTG 946091 >seq1309 Length=750738 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | ||||||||| || ||||||||||| ||||| ||||| | ||| | | Sbjct 105678 AGGCGAAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAGGGAGCGTGG 105737 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||| | || || | || || | || ||||| || || ||||| ||| Sbjct 105738 CCATCCTC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCC 105796 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| || || || ||||| | | |||| | || || || | |||| Sbjct 105797 TTGTCTTGGATTTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACCTCGAGGGTG 105856 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||| | || ||||| || || |||||||| Sbjct 105857 ATCGTCTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894 >seq2277 Length=480552 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 |||||||||| |||||||||||| ||||| || ||||||| || |||||||||||| Sbjct 436021 GAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 435962 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||| | |||| Sbjct 435961 GAGCCCCACGTTGGGC 435946 >seq1676 Length=587991 Score = 84.2 bits (92), Expect = 4e-11 Identities = 149/218 (68%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||| | ||||||||||| || ||||||||| ||||| || || || ||||| || Sbjct 64189 AGGTGAAATACCAAGTGCAGGCTGGACTCTTCCTGGATATTGTAGTCTGAGAGAGTGAGG 64130 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| | || || || || || | || |||| || | ||| | ||| Sbjct 64129 CCATCCT-----------CCAGCAAAAATTAGACACTGCTGGTGAGGCAGGATGTCCTCC 64081 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| || || || ||||| ||| ||||||| | | | || || | |||| Sbjct 64080 TTGTCTTGGATTTTGGCTTTGACTTTCTCAGTGGTGTCCGTGGGCTTGAC-TCGAGGGTG 64022 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||| | |||||||| || || |||||||| Sbjct 64021 ATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 63984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921429884600920