Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq541 163 5e-35
seq377 161 2e-34
seq788 149 1e-30
seq322 134 3e-26
seq203 127 4e-24
seq176 125 1e-23
seq457 95.1 2e-14
seq1309 87.8 3e-12
seq2277 84.2 4e-11
seq1676 84.2 4e-11
>seq541
Length=1170729
Score = 163 bits (180), Expect = 5e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||||| |||||||| ||||| || || || | ||||||||
Sbjct 610524 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 610583
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || ||||| || || ||||| || || ||||| || || |||||
Sbjct 610584 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 610643
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| ||| ||||||||||| | || || |||| ||||||||| ||
Sbjct 610644 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 610703
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| || |||||||| ||||| ||||||||| ||
Sbjct 610704 CCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 610736
>seq377
Length=1354867
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||| ||| |||| ||| || || |||||||| |||||||||||||| || || || |
Sbjct 824412 AGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGG 824471
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || ||||| || || ||||| || || ||||| ||
Sbjct 824472 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 824531
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| ||||| ||||| ||||| || ||||||||||| | || || |||| || |
Sbjct 824532 TTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGG 824591
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||| || || || |||||||| ||||| ||||||||| ||
Sbjct 824592 ATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 824633
>seq788
Length=1000743
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || ||||||||||| ||||| ||||| || ||
Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||| || || || || | || | || ||||| || ||
Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| || || || ||||| ||| |||||||| | || ||
Sbjct 445117 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 445176
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || ||||| |||||||| || || ||||||||
Sbjct 445177 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq322
Length=1513654
Score = 134 bits (148), Expect = 3e-26
Identities = 156/209 (75%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| || ||||||||||| ||||| ||||| || || || || | |||||||||
Sbjct 277541 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCT 277482
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || || | || | || ||||| || || ||||| |||| ||||||
Sbjct 277481 AGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGG 277422
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || || ||||| ||| ||||||| | || || | || ||||||||| ||
Sbjct 277421 ATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCT-CAGGGTGATGGTCTTG 277363
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| ||||||||||| || || ||||||||
Sbjct 277362 CCTGTGAGGGTCTTCACAAAGATCTGCAT 277334
>seq203
Length=1941613
Score = 127 bits (140), Expect = 4e-24
Identities = 154/209 (74%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| || ||||||||| | |||| ||||| || || || || | ||| ||||
Sbjct 1855975 ACCAAGTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTCC 1856032
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || || || || | || ||||| || || ||| | |||||||||||
Sbjct 1856033 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGG 1856092
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || || ||||| ||| |||||||| | || || || | ||||||| | ||
Sbjct 1856093 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTG 1856152
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| ||||| ||||||||
Sbjct 1856153 CCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
>seq176
Length=2148545
Score = 125 bits (138), Expect = 1e-23
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || ||||||| |||||||| ||||| || || || | ||||||||
Sbjct 212429 ACCAGGTG-AGAGTCAACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 212371
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG-TCTTG 68371
| |||||| | ||| || ||||| || | ||||| | || ||||| ||||| || ||
Sbjct 212370 AGCTGCTTGCTGGCAAAGATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATCCTG 212311
Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431
||||| ||||| || ||||||||||| | || || |||| ||||||||| ||
Sbjct 212310 GATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 212251
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || |||||||| | ||| |||||||||
Sbjct 212250 GCTGGTCAGGGTCTTCATGAAGATCTGCATT 212220
>seq457
Length=1382432
Score = 95.1 bits (104), Expect = 2e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || ||||||||||| ||| | | | || ||||| | |
Sbjct 946305 AGGCGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGCTACTGTGGTCTGAGAGAGCGCGG 946246
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
||||| || | ||| || || || || | || || ||||| || || ||||| ||
Sbjct 946245 CCATCCTCCAGCTGTTTGCCCGCAAAGGTCAGATGCTGCTGGTCAGGAGGGATGCCCTCT 946186
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| | || || |||| || |||| ||||||| | || || |||| ||||
Sbjct 946185 TTGTCTTGGGTTTTGGCTTTGATGGTCTCGGTGGTGTCACTGGGCTCAACCTCCAGGGTG 946126
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458
|||| || ||| | |||||||| || || ||||
Sbjct 946125 CTGGTCTTGCCCCTCAGGGTCTTCACAAAGGTCTG 946091
>seq1309
Length=750738
Score = 87.8 bits (96), Expect = 3e-12
Identities = 151/218 (69%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | ||||||||| || ||||||||||| ||||| ||||| | ||| | |
Sbjct 105678 AGGCGAAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAGGGAGCGTGG 105737
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
||||| || | ||| | || || | || || | || ||||| || || ||||| |||
Sbjct 105738 CCATCCTC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCC 105796
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| || || || ||||| | | |||| | || || || | ||||
Sbjct 105797 TTGTCTTGGATTTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACCTCGAGGGTG 105856
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||| | || ||||| || || ||||||||
Sbjct 105857 ATCGTCTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894
>seq2277
Length=480552
Score = 84.2 bits (92), Expect = 4e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511
|||||||||| |||||||||||| ||||| || ||||||| || ||||||||||||
Sbjct 436021 GAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 435962
Query 84512 GAGCCCCACATCGGGC 84527
||||||||| | ||||
Sbjct 435961 GAGCCCCACGTTGGGC 435946
>seq1676
Length=587991
Score = 84.2 bits (92), Expect = 4e-11
Identities = 149/218 (68%), Gaps = 12/218 (6%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||| | ||||||||||| || ||||||||| ||||| || || || ||||| ||
Sbjct 64189 AGGTGAAATACCAAGTGCAGGCTGGACTCTTCCTGGATATTGTAGTCTGAGAGAGTGAGG 64130
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
||||| | || || || || || | || |||| || | ||| | |||
Sbjct 64129 CCATCCT-----------CCAGCAAAAATTAGACACTGCTGGTGAGGCAGGATGTCCTCC 64081
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| || || || ||||| ||| ||||||| | | | || || | ||||
Sbjct 64080 TTGTCTTGGATTTTGGCTTTGACTTTCTCAGTGGTGTCCGTGGGCTTGAC-TCGAGGGTG 64022
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||| | |||||||| || || ||||||||
Sbjct 64021 ATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 63984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921429884600920
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