Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1818 93.3 3e-14 seq975 93.3 3e-14 seq182 86.0 4e-12 seq1 82.4 5e-11 >seq1818 Length=636242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 433231 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 433172 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || | ||| || ||| ||||| || || | ||| | Sbjct 433171 CTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGA 433112 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || |||||||| |||||||||||||| |||| |||||| | ||| || | || || Sbjct 433111 TCAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTA 433052 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||| ||||| |||||||||||| | || || Sbjct 433051 CAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 433016 >seq975 Length=833997 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 558718 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 558659 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | ||| || ||| ||||| || || | ||| | Sbjct 558658 GTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGA 558599 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || |||||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 558598 TCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTA 558539 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||| ||||| |||||||||||| | || || Sbjct 558538 CAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 558503 >seq182 Length=1985155 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 1379085 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTAC 1379026 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| |||||||||||| | || || Sbjct 1379025 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1378991 >seq1 Length=12736304 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 12236890 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 12236831 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || | ||| || ||| ||||| || || | ||| | Sbjct 12236830 CTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCGAT 12236771 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 | | |||||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 12236770 C-AGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTA 12236712 Query 22010 CAATATTCAGAAGGAATCTACT 22031 ||| ||||| ||||| |||||| Sbjct 12236711 CAACATTCAAAAGGAGTCTACT 12236690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358051862400694