Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1818 118 9e-22
seq975 118 9e-22
seq9145 100 2e-16
seq2520 100 2e-16
seq1 100 2e-16
seq293 96.9 3e-15
seq182 96.9 3e-15
seq541 95.1 1e-14
seq371 89.7 4e-13
>seq1818
Length=636242
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| ||
Sbjct 433000 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 433059
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| || |||||| |||| || ||||| |||| || | ||| || || |||||
Sbjct 433060 CAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 433119
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || |||||| |||| | ||| | || || | || ||| ||
Sbjct 433120 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 433179
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || || || || || ||||| || |||||||||||
Sbjct 433180 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 433227
>seq975
Length=833997
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| ||
Sbjct 558487 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 558546
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| || |||||| ||||| || ||||| |||| || | ||| || || |||||
Sbjct 558547 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 558606
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || |||||| |||| | ||| | || || | | ||| ||
Sbjct 558607 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAAC 558666
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || || || || || ||||| || |||||||||||
Sbjct 558667 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714
>seq9145
Length=4041
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224
|||||||| || | ||| | || || | |||||||||||||| || || ||||||
Sbjct 280 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 339
Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284
|||||| ||||| || ||||| |||| || | ||| || || |||||||| |||||
Sbjct 340 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 399
Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344
|| | |||||| |||| | ||| | || || | || ||| || || | ||
Sbjct 400 TTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTG 459
Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || || || || || ||||| || |||||||||||
Sbjct 460 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 497
>seq2520
Length=369870
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224
|||||||| || | ||| | || || | |||||||||||||| || || ||||||
Sbjct 184208 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 184149
Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284
|||||| ||||| || ||||| |||| || | ||| || || |||||||| |||||
Sbjct 184148 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 184089
Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344
|| | |||||| |||| | ||| | || || | || ||| || || | ||
Sbjct 184088 TTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTG 184029
Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || || || || || ||||| || |||||||||||
Sbjct 184028 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 183991
>seq1
Length=12736304
Score = 100 bits (110), Expect = 2e-16
Identities = 141/197 (72%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || |||||||||||||| || || ||| || |||||| ||||| || |||
Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || | ||||||||| ||||| || || |||||| |||
Sbjct 12236751 GCAAAGATCAGTCTCTGCTGAT-CGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTT 12236809
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | ||| | || || | || ||| || || | ||| | || || || || || |||
Sbjct 12236810 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 12236869
Query 114366 TTTACAAAAATCTGCAT 114382
|| || |||||||||||
Sbjct 12236870 TTCACGAAAATCTGCAT 12236886
>seq293
Length=1771812
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| ||||| || || | ||| | || || || |||||| ||||||| ||
Sbjct 534101 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 534042
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| || |||||| ||||| || ||||| |||| | | ||| || || |||||
Sbjct 534041 CAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 533982
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || |||||| |||| | ||| | || || | || ||| |
Sbjct 533981 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGC 533922
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || | |||||||| || |||||||||||
Sbjct 533921 CTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCAT 533874
>seq182
Length=1985155
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| ||
Sbjct 1378975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 1379034
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| | |||||| ||||| || ||||| |||| || | ||| || || |||||
Sbjct 1379035 CAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 1379094
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || |||||| | || | ||| | || | | || ||| |
Sbjct 1379095 AATTCCTTCCTTATCCTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGC 1379154
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | | | | || || || || || ||||| | |||||||||||
Sbjct 1379155 CTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCAT 1379202
>seq541
Length=1170729
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 610536 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 610595
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| || || ||||| ||||| || ||||| ||
Sbjct 610596 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 610655
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | ||| | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 610656 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 610715
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 610716 TTCACGAAGATCTGCAT 610732
>seq371
Length=1453275
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| |||| |||||||| || | ||| | || || || ||||||||| |||| || |
Sbjct 449795 ACCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACA 449736
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| | ||||| ||||| || |||| | | || || | || || || |||||
Sbjct 449735 CAAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGTGAATATCAGTC--TGCTGATCAGGAGG 449678
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || ||||| |||| | ||| || || | | |||||| ||
Sbjct 449677 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAAC 449618
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || | || ||||| ||||||||||||||
Sbjct 449617 CTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 449570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420048833196132
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