Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19 122 2e-22 seq674 87.8 3e-12 >seq19 Length=4596781 Score = 122 bits (134), Expect = 2e-22 Identities = 352/531 (66%), Gaps = 23/531 (4%) Strand=Plus/Minus Query 42443 TGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTT 42500 ||| |||||||| ||||| ||| ||| |||| | |||| || ||| ||| Sbjct 3965509 TGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACA-- 3965452 Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 || || ||||| ||||| |||||||| || ||||| || ||| | || |||||| ||||| Sbjct 3965451 GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAGATGTAC 3965392 Query 42561 GCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAG 42617 | || |||| ||| ||| | ||| ||| || | | || ||||| Sbjct 3965391 ---AGTCTCCTCATTGACAGTTACGTTAAAGATTCCGAAGAAAGGGAATTTCTCTTCAAC 3965335 Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||| | |||| ||||| || | |||||| || |||||||| | | |||| | | Sbjct 3965334 GCCCTCCAGACAATGCCTTGTGTAAAGAAG---GCAGACTGGGCCTTGCATTGGACTG-G 3965279 Query 42678 AGTCCC-GACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736 | | || || || | ||| || || | || | |||| | || || || || ||||| Sbjct 3965278 CGACAAAGAGGCTACCTACGGGGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTT 3965219 Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGA 42794 ||| || || | || || | || |||||||||||| | | | | | |||||| || Sbjct 3965218 CTTTTCTGGTTCTTTTGCGACGATATTCTGGCTCAAGAA--ACGCGACCTGATGCCTGG- 3965162 Query 42795 CTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 || || || || || ||||| || ||||| || ||||| | || | |||||||||||| Sbjct 3965161 CTGACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGC 3965102 Query 42855 CTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATC 42914 || ||||| | || || ||||| || || ||| || | || || || || Sbjct 3965101 CTGATGTTC---AAACAACTGGTCCACAAACCTTCCAAGCAGAGAGTGAAGGAAATAATT 3965045 Query 42915 ACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 | | ||||| ||| ||| ||| |||||||||| || | |||| ||| Sbjct 3965044 ATTAATGCCGTTCGGATAGAGCAGGGGTTCCTCACGGAGACCTTGCCTGTG 3964994 >seq674 Length=1058379 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || || || || || ||||||||||| | || || | || |||| Sbjct 558125 TGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 558184 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | |||| || |||||||||||||| || || || |||||||||||||| Sbjct 558185 GGCTAAAGAAAAGAGGTCTC-ATGCCCGGACTCACGTTTTCCAATGAACTCATCAGCAGA 558243 Query 42825 GACGA 42829 || || Sbjct 558244 GATGA 558248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944141939345360