Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq541 127 5e-24
seq788 116 9e-21
seq203 109 1e-18
seq591 102 2e-16
seq176 102 2e-16
seq371 100 7e-16
seq1309 95.1 3e-14
seq322 93.3 1e-13
>seq541
Length=1170729
Score = 127 bits (140), Expect = 5e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || || || | || ||||| || ||||| | || || ||||| |||
Sbjct 610542 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 610601
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||||| || |||||||| ||||| || || |||||||||
Sbjct 610602 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTT 610661
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| |||||||| ||||| |||
Sbjct 610662 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 610721
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 610722 AAGATCTGCATTTTG 610736
>seq788
Length=1000743
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | || | ||| ||||| |||||||||||||| |
Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | ||||| || || || | ||||||||| || | |||
Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || |||||||| ||||| || || || || | || || | || ||
Sbjct 445117 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 445176
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || ||||| ||||| || || ||||||||
Sbjct 445177 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq203
Length=1941613
Score = 109 bits (120), Expect = 1e-18
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|||||||||||||| | || || || || |||| | ||||| || || || ||||||
Sbjct 1855997 TGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAATCAGA 1856056
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
||||| || | ||||| | || || || |||||||| ||||| || || || ||
Sbjct 1856057 CGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATG 1856116
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || || | || || ||||| ||||| |||| || ||||| ||||| ||||| |||
Sbjct 1856117 GTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCACGAAGATC 1856176
Query 288469 TGCAT 288473
|||||
Sbjct 1856177 TGCAT 1856181
>seq591
Length=1213786
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| |||| || ||||| | || || | || ||||| | || || ||||| ||||
Sbjct 33685 CTTTCCGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 33626
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
| || | ||| || | ||||| ||||||||||||||| | || || ||||| || |
Sbjct 33625 TGAGCCTCTGCTGGCCACGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 33566
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|| | ||| || | ||| || || || ||||| ||||| | |||||| ||||| | ||
Sbjct 33565 TCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTACAGGTCAGGGTCTTCATGA 33506
Query 288464 ATATCTGCATTATG 288477
| | ||||||| ||
Sbjct 33505 AGACCTGCATTTTG 33492
>seq176
Length=2148545
Score = 102 bits (112), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || || || | || ||||| || ||||| | || || | || |||
Sbjct 212412 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 212353
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTC-TTTATCCTGGATTTTCGCTTTCACGTT 288401
|| || | || || || ||||| || || |||||||||||| || || ||||| ||
Sbjct 212352 ATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATCCTGGATCTTGGCCTTCACATT 212293
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | || || | || || || || ||||| ||||| | |||||| ||||| |
Sbjct 212292 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAT 212233
Query 288462 GAATATCTGCATT 288474
||| |||||||||
Sbjct 212232 GAAGATCTGCATT 212220
>seq371
Length=1453275
Score = 100 bits (110), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| ||| || ||||| || | |||||
Sbjct 449794 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACAC 449735
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC-GCTGTTGAGAATCTGG 288365
| || ||| |||||| | ||| || || | ||| ||||| | |||| | || | ||
Sbjct 449734 AAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGTGAATATCAGTCTGCTGATCAGGA---GG 449678
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|||||||| ||||||||||| || || || || ||||||| | | | ||||| ||
Sbjct 449677 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAAC 449618
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| |||||||| | || || || || || ||||||||
Sbjct 449617 CTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 449570
>seq1309
Length=750738
Score = 95.1 bits (104), Expect = 3e-14
Identities = 158/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || | |||||| | || | ||| ||||| |||||||||||| | | |
Sbjct 105669 CCACCCCACAGGCGAAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAG 105728
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| | | | || || || | |||| ||||| | ||||||| ||| || | |||
Sbjct 105729 GGAGCGTGGCCATCCTC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGG 105787
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || |||||||| ||||| || |||| | | || | | || ||
Sbjct 105788 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACC 105847
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||||||||| || |||||||||| || || ||||||||
Sbjct 105848 TCGAGGGTGATCGTCTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894
>seq322
Length=1513654
Score = 93.3 bits (102), Expect = 1e-13
Identities = 136/191 (71%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||||||||| | || || | || ||||||| ||||| || || ||
Sbjct 277523 TCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGCTGTTTGCCCGCAAAA 277464
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||| ||| || | ||||| || || | || |||||||| ||||| || ||
Sbjct 277463 GTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGGATTTTGGCTTTGACATTC 277404
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| | | || || | || || || || ||||| ||||| || || || ||||| ||
Sbjct 277403 TCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCTTGCCTGTGAGGGTCTTCACA 277345
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 277344 AAGATCTGCAT 277334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179401824565058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |