Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq541 127 5e-24 seq788 116 9e-21 seq203 109 1e-18 seq591 102 2e-16 seq176 102 2e-16 seq371 100 7e-16 seq1309 95.1 3e-14 seq322 93.3 1e-13 >seq541 Length=1170729 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 610542 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 610601 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| || |||||||| ||||| || || ||||||||| Sbjct 610602 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTT 610661 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 610662 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 610721 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 610722 AAGATCTGCATTTTG 610736 >seq788 Length=1000743 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| ||||| |||||||||||||| | Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || || || | ||||||||| || | ||| Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || |||||||| ||||| || || || || | || || | || || Sbjct 445117 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 445176 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 445177 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq203 Length=1941613 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 |||||||||||||| | || || || || |||| | ||||| || || || |||||| Sbjct 1855997 TGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAATCAGA 1856056 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 ||||| || | ||||| | || || || |||||||| ||||| || || || || Sbjct 1856057 CGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATG 1856116 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || || | || || ||||| ||||| |||| || ||||| ||||| ||||| ||| Sbjct 1856117 GTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCACGAAGATC 1856176 Query 288469 TGCAT 288473 ||||| Sbjct 1856177 TGCAT 1856181 >seq591 Length=1213786 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| |||| || ||||| | || || | || ||||| | || || ||||| |||| Sbjct 33685 CTTTCCGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 33626 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || | ||| || | ||||| ||||||||||||||| | || || ||||| || | Sbjct 33625 TGAGCCTCTGCTGGCCACGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 33566 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || | ||| || | ||| || || || ||||| ||||| | |||||| ||||| | || Sbjct 33565 TCATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTACAGGTCAGGGTCTTCATGA 33506 Query 288464 ATATCTGCATTATG 288477 | | ||||||| || Sbjct 33505 AGACCTGCATTTTG 33492 >seq176 Length=2148545 Score = 102 bits (112), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || | || ||| Sbjct 212412 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 212353 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTC-TTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || || || ||||| || || |||||||||||| || || ||||| || Sbjct 212352 ATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATCCTGGATCTTGGCCTTCACATT 212293 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || || | || || || || ||||| ||||| | |||||| ||||| | Sbjct 212292 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAT 212233 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 212232 GAAGATCTGCATT 212220 >seq371 Length=1453275 Score = 100 bits (110), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || | ||||| Sbjct 449794 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACAC 449735 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC-GCTGTTGAGAATCTGG 288365 | || ||| |||||| | ||| || || | ||| ||||| | |||| | || | || Sbjct 449734 AAAGTTTGTCTGTCTTCCAGTTGCTTGCCAGTGAATATCAGTCTGCTGATCAGGA---GG 449678 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| ||||||||||| || || || || ||||||| | | | ||||| || Sbjct 449677 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAAC 449618 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| | || || || || || |||||||| Sbjct 449617 CTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 449570 >seq1309 Length=750738 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | |||||| | || | ||| ||||| |||||||||||| | | | Sbjct 105669 CCACCCCACAGGCGAAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAG 105728 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | | | || || || | |||| ||||| | ||||||| ||| || | ||| Sbjct 105729 GGAGCGTGGCCATCCTC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGG 105787 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || |||||||| ||||| || |||| | | || | | || || Sbjct 105788 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACC 105847 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || |||||||||| || || |||||||| Sbjct 105848 TCGAGGGTGATCGTCTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894 >seq322 Length=1513654 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | || || | || ||||||| ||||| || || || Sbjct 277523 TCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGCTGTTTGCCCGCAAAA 277464 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||| ||| || | ||||| || || | || |||||||| ||||| || || Sbjct 277463 GTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGGATTTTGGCTTTGACATTC 277404 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | || || | || || || || ||||| ||||| || || || ||||| || Sbjct 277403 TCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCTTGCCTGTGAGGGTCTTCACA 277345 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 277344 AAGATCTGCAT 277334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179401824565058