Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq788 113 5e-20 seq5116 93.3 5e-14 seq203 93.3 5e-14 seq4756 91.5 2e-13 seq943 91.5 2e-13 seq795 91.5 2e-13 seq1410 89.7 6e-13 seq975 82.4 8e-11 >seq788 Length=1000743 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || || ||||| || || | |||||| || | || || Sbjct 445014 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 445073 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || || || | || ||||||||||| | || | || ||||||||| Sbjct 445074 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 445133 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | | ||||| || | || || || | |||||||| || Sbjct 445134 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 445193 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| |||||||| ||||| Sbjct 445194 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq5116 Length=71533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 25502 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 25443 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 25442 ACTATACTAACGAGGA 25427 >seq203 Length=1941613 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| | || ||||| || || | ||| || || | | || Sbjct 1855974 CACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || || || || || ||||||||||| | || | | ||||||||| Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | | ||||| || | || || |||| |||||| | || Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| || ||||| ||||| Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq4756 Length=97781 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 85726 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 85667 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 85666 TACTAACGAGGAT 85654 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 88013 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 87954 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 87953 TACTAACGAGGA 87942 >seq943 Length=832053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 250521 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 250580 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 250581 ATACTAACGAGGA 250593 >seq795 Length=1132128 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 893659 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 893600 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 893599 ATACTAACGAGGA 893587 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 964360 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 964419 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 964420 TACTAACGAGGA 964431 >seq1410 Length=700509 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 86297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 86238 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 86237 TACTAACGAGGA 86226 >seq975 Length=833997 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | || |||||||||||| ||||| |||| || ||| || | || Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || || ||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| | || | || | | | | || || || ||| || |||| ||||||| Sbjct 558622 C-TGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGG 558680 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || ||||| || || || || || || |||||||| Sbjct 558681 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543099329636240