Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq975 109 5e-19
seq788 107 2e-18
seq1818 104 2e-17
seq293 91.5 1e-13
seq1 91.5 1e-13
seq541 86.0 6e-12
>seq975
Length=833997
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || |||||| | ||| | |||||||| |||||||| ||||| ||
Sbjct 558485 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCA 558544
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| ||||| ||| || || || || ||||| |||||| || ||||||||| |||
Sbjct 558545 GACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 558604
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| || || ||| | | ||| | || |||| ||
Sbjct 558605 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCA 558664
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| ||| | || || || || || ||||| || |||||||||||
Sbjct 558665 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714
>seq788
Length=1000743
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| || | |||||| || | || |||||||| || ||||| || || |
Sbjct 444997 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 445056
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || |||||||| || || | | || |||||||| || || ||
Sbjct 445057 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 445116
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||||||||| |||||| |||| | || | |||||| | ||||||
Sbjct 445117 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 445176
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || ||||| ||||| || || ||||| ||||||||
Sbjct 445177 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq1818
Length=636242
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || |||||| | ||| | |||||||| |||||||| ||||| ||
Sbjct 432998 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCA 433057
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| ||||| ||| || || | || ||||| |||||| || ||||||||| |||
Sbjct 433058 GACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 433117
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| || || ||| | | ||| | || |||| ||
Sbjct 433118 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCA 433177
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| ||| | || || || || || ||||| || |||||||||||
Sbjct 433178 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 433227
>seq293
Length=1771812
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || ||||| | ||| | || ||||| |||||| | ||||| ||
Sbjct 534103 GCACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCA 534044
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| ||||| ||| || || || || ||||| ||||||||| ||||||||| |||
Sbjct 534043 GACAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGA 533984
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| || || ||| | | ||| | || |||| ||
Sbjct 533983 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCA 533924
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| |||| || | || || || | |||||||| || |||||||||||
Sbjct 533923 GCCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCAT 533874
>seq1
Length=12736304
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/197 (71%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| |||||||| ||||| || || ||||| ||| || || || || |||
Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| || ||||||||| ||||| || || ||||| ||| || || |||
Sbjct 12236751 GCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTT 12236809
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | ||| | || |||| || || |||| ||| | || || || || || |||
Sbjct 12236810 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 12236869
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 12236870 TTCACGAAAATCTGCAT 12236886
>seq541
Length=1170729
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || |||||||| | ||||| ||| || ||||| || ||
Sbjct 610536 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 610595
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | | |||||| || || || |||||||| || || ||| || |||
Sbjct 610596 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 610655
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | ||||| |||||| | ||| || || | ||| | || ||||||||||| ||
Sbjct 610656 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 610715
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 610716 TTCACGAAGATCTGCAT 610732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475401473826640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |