Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq6485 159 5e-34
seq258 150 3e-31
seq1057 100 4e-16
>seq6485
Length=19947
Score = 159 bits (176), Expect = 5e-34
Identities = 216/301 (72%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | |||||| | || ||||| |||||||| || || ||||| |||||||| |
Sbjct 571 AACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 512
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | || ||||| || || || || ||||| || |||||||| |
Sbjct 511 GGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 452
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| || |||||| || |||| || ||||||||||| || || || |||| || |
Sbjct 451 AGGTGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCCATTTCTAC 392
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
||| ||||||| ||||||||| | ||||| || ||||| | | || | | | || ||
Sbjct 391 CATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTAGCAGGAGGGCGGGATACAG 332
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
||| | || || | || ||||| ||||| || ||| | ||||| || |||||||| ||
Sbjct 331 TTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTCC 272
Query 9175 T 9175
|
Sbjct 271 T 271
>seq258
Length=1842251
Score = 150 bits (166), Expect = 3e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || || | | |||| ||| |||| || || || || ||||| || ||||| |||||
Sbjct 697494 GTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCACAGACT 697435
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||||||||| | ||||| || |||||||||||||| | ||| ||||| | || ||
Sbjct 697434 CTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGCCCGAAG 697375
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
||||| | ||||| ||||| || || | || || | | ||| | || | ||| | |
Sbjct 697374 ACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGGTAGATCATCTCC 697315
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969
||||| || |||||||| ||||| ||||||| || || ||||| ||||||
Sbjct 697314 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCTGA 697264
Score = 122 bits (134), Expect = 1e-22
Identities = 133/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| |||| | |||||||| || |||||| ||| ||| | ||
Sbjct 696451 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 696392
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||||||||||||
Sbjct 696391 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 696332
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || | | || || ||| |||||||||| | |||||||||| ||
Sbjct 696331 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAG 696275
Score = 118 bits (130), Expect = 2e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || || |||||| || || || || |||| ||| |||
Sbjct 695840 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 695781
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| ||||| ||||| ||||||||||| || |||||||| |||| |||||
Sbjct 695780 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCTACATTGTAAGTT 695721
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | |||||||||
Sbjct 695720 GGTGGACTCTCAATCAAATGTGACCTGGCT 695691
Score = 109 bits (120), Expect = 8e-19
Identities = 197/286 (69%), Gaps = 4/286 (1%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
||||||||||| || |||| ||||| || || |||| | || || | | | ||
Sbjct 698097 CCGGCAATCTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCCAGCAATATA 698038
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || || | | || |||| | ||| |||| | || |||
Sbjct 698037 GAGTTGTTGTAGATAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 697978
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||||
Sbjct 697977 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 697918
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | ||| |||||||| | |||| ||||| || ||||
Sbjct 697917 TGGAACTGTTGGT--TGAAAAGCAGCTCTGGGTCAAATTTCAGCTTGAAGTAATAGCCGC 697860
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | ||||| || || | | || | ||| ||||||||||| ||
Sbjct 697859 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATGGTTTCTCC 697814
>seq1057
Length=891284
Score = 100 bits (110), Expect = 4e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022
|| || ||||| ||||| || ||||||||| | || ||||||||| ||| | | |||
Sbjct 883669 TCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGG 883728
Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082
|| || | |||||| |||||||| | || || || ||||| || ||||| | |||
Sbjct 883729 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATAGAGTTTGGA 883788
Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141
| || || | || | |||| | ||||| || | || |||| || ||||| ||
Sbjct 883789 TGGCACTTCTCCA-GAAGCAGCCCCGGGTAGAACTCCAAGGCATCGATGTGTCCATACAG 883847
Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
| ||||||||||| || ||||||||||| |||
Sbjct 883848 CTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCT 883881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723576822267400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |