Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq6485 159 5e-34 seq258 150 3e-31 seq1057 100 4e-16 >seq6485 Length=19947 Score = 159 bits (176), Expect = 5e-34 Identities = 216/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | |||||| | || ||||| |||||||| || || ||||| |||||||| | Sbjct 571 AACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 512 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || ||||| || || || || ||||| || |||||||| | Sbjct 511 GGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 452 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || |||||| || |||| || ||||||||||| || || || |||| || | Sbjct 451 AGGTGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCCATTTCTAC 392 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | ||||| || ||||| | | || | | | || || Sbjct 391 CATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTAGCAGGAGGGCGGGATACAG 332 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 ||| | || || | || ||||| ||||| || ||| | ||||| || |||||||| || Sbjct 331 TTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTCC 272 Query 9175 T 9175 | Sbjct 271 T 271 >seq258 Length=1842251 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || | | |||| ||| |||| || || || || ||||| || ||||| ||||| Sbjct 697494 GTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCACAGACT 697435 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | ||||| || |||||||||||||| | ||| ||||| | || || Sbjct 697434 CTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGCCCGAAG 697375 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | ||||| ||||| || || | || || | | ||| | || | ||| | | Sbjct 697374 ACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGGTAGATCATCTCC 697315 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 ||||| || |||||||| ||||| ||||||| || || ||||| |||||| Sbjct 697314 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCTGA 697264 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| || |||||| ||| ||| | || Sbjct 696451 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 696392 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 696391 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 696332 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | |||||||||| || Sbjct 696331 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAG 696275 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || || |||||| || || || || |||| ||| ||| Sbjct 695840 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 695781 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| || |||||||| |||| ||||| Sbjct 695780 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCTACATTGTAAGTT 695721 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||||||||| Sbjct 695720 GGTGGACTCTCAATCAAATGTGACCTGGCT 695691 Score = 109 bits (120), Expect = 8e-19 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 ||||||||||| || |||| ||||| || || |||| | || || | | | || Sbjct 698097 CCGGCAATCTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCCAGCAATATA 698038 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || || | | || |||| | ||| |||| | || ||| Sbjct 698037 GAGTTGTTGTAGATAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 697978 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 697977 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 697918 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | |||| ||||| || |||| Sbjct 697917 TGGAACTGTTGGT--TGAAAAGCAGCTCTGGGTCAAATTTCAGCTTGAAGTAATAGCCGC 697860 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| || || | | || | ||| ||||||||||| || Sbjct 697859 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATGGTTTCTCC 697814 >seq1057 Length=891284 Score = 100 bits (110), Expect = 4e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || ||||| ||||| || ||||||||| | || ||||||||| ||| | | ||| Sbjct 883669 TCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGG 883728 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | |||||| |||||||| | || || || ||||| || ||||| | ||| Sbjct 883729 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATAGAGTTTGGA 883788 Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || || | || | |||| | ||||| || | || |||| || ||||| || Sbjct 883789 TGGCACTTCTCCA-GAAGCAGCCCCGGGTAGAACTCCAAGGCATCGATGTGTCCATACAG 883847 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | ||||||||||| || ||||||||||| ||| Sbjct 883848 CTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCT 883881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723576822267400