Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq788 116 4e-21
seq541 105 8e-18
seq377 96.9 4e-15
seq203 91.5 2e-13
seq3096 82.4 9e-11
>seq788
Length=1000743
Score = 116 bits (128), Expect = 4e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | || || | ||||| |||| || ||| || |||||||| ||||| |
Sbjct 444995 TGCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTG 445054
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || | || || ||||| ||||| || || | || ||||||||||| | ||
Sbjct 445055 ACAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCG 445114
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| ||| || |||| || | | ||||| || | || |
Sbjct 445115 GGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 445174
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| ||||||||||| || || |||||||| |||||
Sbjct 445175 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq541
Length=1170729
Score = 105 bits (116), Expect = 8e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||| || || |||||||| | || || ||||||||||| || ||
Sbjct 610541 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 610600
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||| | || | || ||| || || |||||| ||| | |
Sbjct 610601 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTT 610660
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || | ||||| |||| |||||||| ||||| ||||| || || ||
Sbjct 610661 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 610720
Query 46582 AAAGATTTGCATTTTG 46597
||||| |||||||||
Sbjct 610721 GAAGATCTGCATTTTG 610736
>seq377
Length=1354867
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| |||| || ||| || ||||| || || || || |||||||| | || ||
Sbjct 824421 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCC 824480
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || || || | | ||||||||| | || | || ||| || || |
Sbjct 824481 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 824540
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | | | | ||||| || | ||||| |||| | |||||| |||
Sbjct 824541 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTCTTG 824600
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| || || || || || ||||| |||||||||
Sbjct 824601 CCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 824633
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||||||||| || || |||||||| | || || | |||||||| ||| ||
Sbjct 824210 CTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGCTTGCTGGCAAA 824269
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||| | || | || ||| || | ||| ||| ||| | |
Sbjct 824270 GATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGGATATTCGCCTTCACATT 824329
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || | ||||| |||| |||||||| ||||| || || || || ||
Sbjct 824330 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCAC 824389
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 824390 GAAGATCTGCAT 824401
>seq203
Length=1941613
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
|||||||| ||||| || || || || | | || ||||| ||||| || || ||||
Sbjct 1855997 TGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAATCAGA 1856056
Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528
||||||||||| | ||| | | ||||||||| ||| || |||| || | |
Sbjct 1856057 CGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATG 1856116
Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588
||||| || | || || || | |||||| | ||||||||||| || || || |||||
Sbjct 1856117 GTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCACGAAGATC 1856176
Query 46589 TGCAT 46593
|||||
Sbjct 1856177 TGCAT 1856181
>seq3096
Length=280261
Score = 82.4 bits (90), Expect = 9e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
|||||||||||||| || |||||||| | || | ||| | ||||| |||| ||||
Sbjct 94331 TGGATATTGTAGTCTGAGAGAGTGCGGCCATCCTTCAGCGGTTTGCCCACGAAAATCAGA 94390
Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGC-CAC 46527
| ||||||||| | || ||||||||||| || ||| || |||| || | |||
Sbjct 94391 CACTGCTGGTCAGGTGGGACGCTCTCCTTATCTTGGATTTTGGCTTTGACATTCTCTCAC 94450
Query 46528 -CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGA 46586
||||| || | || || |||| ||||||| ||||| |||| || || | ||||
Sbjct 94451 TGGTGTCACTGGGCTCAACCTCCAGGTTGATGGTCTTGCCTATCAGGGTCTTCGCGAAGA 94510
Query 46587 TTTGCAT 46593
| ||||
Sbjct 94511 TCGGCAT 94517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565120328763720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |