Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq788 116 4e-21 seq541 105 8e-18 seq377 96.9 4e-15 seq203 91.5 2e-13 seq3096 82.4 9e-11 >seq788 Length=1000743 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || || | ||||| |||| || ||| || |||||||| ||||| | Sbjct 444995 TGCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTG 445054 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || ||||| ||||| || || | || ||||||||||| | || Sbjct 445055 ACAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCG 445114 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || |||| || | | ||||| || | || | Sbjct 445115 GGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 445174 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||||||||| || || |||||||| ||||| Sbjct 445175 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq541 Length=1170729 Score = 105 bits (116), Expect = 8e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || |||||||| | || || ||||||||||| || || Sbjct 610541 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 610600 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || ||| || || |||||| ||| | | Sbjct 610601 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTT 610660 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 610661 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 610720 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||||||| Sbjct 610721 GAAGATCTGCATTTTG 610736 >seq377 Length=1354867 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| || ||||| || || || || |||||||| | || || Sbjct 824421 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCC 824480 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | | ||||||||| | || | || ||| || || | Sbjct 824481 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 824540 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | ||||| || | ||||| |||| | |||||| ||| Sbjct 824541 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTCTTG 824600 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || || || || || ||||| ||||||||| Sbjct 824601 CCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 824633 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||||||||| || || |||||||| | || || | |||||||| ||| || Sbjct 824210 CTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGCTTGCTGGCAAA 824269 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || ||| || | ||| ||| ||| | | Sbjct 824270 GATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGGATATTCGCCTTCACATT 824329 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | ||||| |||| |||||||| ||||| || || || || || Sbjct 824330 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCAC 824389 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 824390 GAAGATCTGCAT 824401 >seq203 Length=1941613 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 |||||||| ||||| || || || || | | || ||||| ||||| || || |||| Sbjct 1855997 TGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAATCAGA 1856056 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 ||||||||||| | ||| | | ||||||||| ||| || |||| || | | Sbjct 1856057 CGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATG 1856116 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| || | || || || | |||||| | ||||||||||| || || || ||||| Sbjct 1856117 GTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCACGAAGATC 1856176 Query 46589 TGCAT 46593 ||||| Sbjct 1856177 TGCAT 1856181 >seq3096 Length=280261 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 |||||||||||||| || |||||||| | || | ||| | ||||| |||| |||| Sbjct 94331 TGGATATTGTAGTCTGAGAGAGTGCGGCCATCCTTCAGCGGTTTGCCCACGAAAATCAGA 94390 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGC-CAC 46527 | ||||||||| | || ||||||||||| || ||| || |||| || | ||| Sbjct 94391 CACTGCTGGTCAGGTGGGACGCTCTCCTTATCTTGGATTTTGGCTTTGACATTCTCTCAC 94450 Query 46528 -CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGA 46586 ||||| || | || || |||| ||||||| ||||| |||| || || | |||| Sbjct 94451 TGGTGTCACTGGGCTCAACCTCCAGGTTGATGGTCTTGCCTATCAGGGTCTTCGCGAAGA 94510 Query 46587 TTTGCAT 46593 | |||| Sbjct 94511 TCGGCAT 94517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565120328763720