Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq788 125 7e-24 seq541 123 2e-23 seq203 116 4e-21 seq322 100 3e-16 seq4063 91.5 1e-13 seq1526 86.0 6e-12 seq1 86.0 6e-12 seq1818 84.2 2e-11 seq975 84.2 2e-11 seq878 84.2 2e-11 seq457 84.2 2e-11 >seq788 Length=1000743 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || |||||| ||| Sbjct 445223 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 445164 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| ||||||| ||||| ||||| || |||||| ||||| Sbjct 445163 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCAT-CCCGCCTGACCA 445105 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || ||| ||||||||||||||||| || | || || || ||||| || Sbjct 445104 GCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAA 445045 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || || | || ||||| |||||||| || Sbjct 445044 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCG 445009 >seq541 Length=1170729 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 610735 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 610676 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | ||||| | || | || |||| || |||||||| || ||| | || Sbjct 610675 AGTGACACCATCGAAAACG-TGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGA 610617 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||| || || || Sbjct 610616 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 610557 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || | || || || |||| || || |||| || ||| Sbjct 610556 CAACATCCAGAAAGAGTCAACTCTCCACCTGGTTCTCTGTCTGAGGGGTGGC 610505 >seq203 Length=1941613 Score = 116 bits (128), Expect = 4e-21 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| | ||||||| |||| || ||| ||| Sbjct 1856181 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGAACATCACCCTCGAGGTTGAGCCCAGT 1856122 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| ||||||| ||||| |||| || |||||| ||||| Sbjct 1856121 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGACAT-CCCGCCTGACCA 1856063 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||||||||||||||||| | | || ||||| ||||| || Sbjct 1856062 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGCTGGCCGTACCCTGTCAGACTATAA 1856003 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGC 38454 ||||| | || | || ||||| ||||||| Sbjct 1856002 TATCCAGA--GAGTCCACCCTGCACTTGGTGC 1855973 >seq322 Length=1513654 Score = 100 bits (110), Expect = 3e-16 Identities = 154/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || |||||| ||| Sbjct 277334 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCT-GAGGTCGAGCCCAGT 277392 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || || | | |||| ||||||| ||| | ||||| || |||||| |||| Sbjct 277393 GACACCACTGAGAATG-TCAAAGCCAAAATCCAAGACCAGGAGGGCAT-CCCGCCTGACC 277450 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | || | || |||||||||||||| || || | | || || ||||| | Sbjct 277451 AGCAGTGTCTGACTTTTGCGGGCAAACAGCTAGAAGATGGCTGTACTCTGTCAGACTATA 277510 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGC 38454 | ||||| || || | || ||||| ||||||| Sbjct 277511 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGC 277543 >seq4063 Length=161870 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || || || || || || ||| || ||||||||| || | | |||| Sbjct 8177 AAAAGATGCAGATCTTTGTGAAGACCCTAGTGGGAAAGACCATCACCCTCAAGGCCGAGC 8236 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAA-------AAAATCCTCGACAAAGAGGGAATT 38351 ||| |||| | | ||| | ||| | ||||||| ||||| |||| || Sbjct 8237 CCAGTGACACCATTGAAAATGTCAAAAATCCAAGCCAAAATCCAAGACAAGGAGGACAT- 8295 Query 38352 CCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 38410 || ||| ||||| |||| |||| || |||||||||||||||||| | | ||||| || Sbjct 8296 CCTGCCTGACCAGCAGCATCTCAGTTCTGCGGGCAAACAGCTGGACAATGGACGCACTCT 8355 Query 38411 CAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||| |||| | || || || | || |||| |||||||| || || |||| || Sbjct 8356 CTCAGACCACAATGTACAGAAAGAGTCCACCGTGCACTTGGTGCTTCGCCTGCGAGGTGG 8415 Query 38471 C 38471 | Sbjct 8416 C 8416 >seq1526 Length=597461 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | || | || || ||||||||||| |||| ||||||||| |||||| Sbjct 458236 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAGGACGGGCGCACCCTGTCAGACTAC 458295 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| ||||| ||||| ||||| || || Sbjct 458296 AACATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 458345 >seq1 Length=12736304 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || ||||| || ||||||||| |||| || || || Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | || | || || | || || || |||||||| |||| Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT-CCGAT 12236771 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | || || | || ||||| || ||||| || | ||||| | |||||| Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711 Query 38421 AACATCCAAAAGGA 38434 ||||| |||||||| Sbjct 12236710 AACATTCAAAAGGA 12236697 >seq1818 Length=636242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || ||||| || ||||||||| |||| || || || Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | || | || || | || || || |||||||| | || Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | || || | || ||||| | ||||| || | ||||| | |||||| Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| |||||||| | || || ||| | ||| || Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 433015 >seq975 Length=833997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || ||||| || ||||||||| |||| || || | Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | || | || || | || || || |||||||| | || Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | || || | || ||||| || ||||| || | ||||| | |||||| Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| |||||||| | || || ||| | ||| || Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 558502 >seq878 Length=898115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| || || | ||| ||||| ||||||||||| | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||| | || ||| || |||||||||| || || || || || |||| Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 133037 CCAC 133040 |||| Sbjct 679034 CCAC 679031 >seq457 Length=1382432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 |||| | || | || || || || || | |||||| |||| |||| | || || ||| | Sbjct 946084 AAAATTACAGACCTTTGTGAAGACCCTGAGGGGCAAGACCAGCACCCTGGAGGTTGAGCC 946143 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | || | |||| |||| || ||||||||||| || || | || Sbjct 946144 CAGTGACACCACCGAGACCATCAAAGCCAAAACCCAAGACAAAGAGGGCATCCCTCCTGA 946203 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| |||| || | | ||||||||||||||||| || | ||| | ||| ||| | Sbjct 946204 CCAGCAGCATCTGACCTTTGCGGGCAAACAGCTGGAGGATGGCCGCGCTCTCTCAGACCA 946263 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || | ||| || || | || ||||| ||||||| || Sbjct 946264 CAGTAGCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCG 946302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500068320154240