Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq962 178 5e-39 seq975 125 3e-23 seq9145 123 1e-22 seq2520 123 1e-22 seq1818 120 1e-21 seq293 118 4e-21 seq1 109 2e-18 seq182 105 3e-17 seq1781 96.9 1e-14 seq371 93.3 2e-13 seq4269 89.7 2e-12 seq124 89.7 2e-12 seq1095 87.8 7e-12 seq168 87.8 7e-12 >seq962 Length=973860 Score = 178 bits (196), Expect = 5e-39 Identities = 351/517 (68%), Gaps = 7/517 (1%) Strand=Plus/Plus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 |||||||| | |||||| |||||| | |||||| | | || | ||||| | || ||| Sbjct 296389 AACACAGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTAGTGCAA 296448 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTA--TATTC 451208 ||| | ||| | | ||| | | ||| | ||| || ||| |||||| | |||| Sbjct 296449 TCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTATTG 296508 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 || | || ||||| || | ||| |||| |||||| ||||| || |||||||| | Sbjct 296509 GTGTCA--TACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTAC 296566 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| || || || || | | | || || ||||| |||| || | Sbjct 296567 TGACGAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCCGTTACCAATGCTGTGA 296626 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || || |||||||||||| | ||||| || || || || |||||||| | Sbjct 296627 TCACTGTACCAGCGTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGCGTGA 296686 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | ||||| || ||||||| |||||||| ||||| ||||| | || |||| Sbjct 296687 TTGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCGTATG 296746 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| | || | ||| | || | || | |||||| | ||||||| Sbjct 296747 GCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGATCTAGGTGGAG 296803 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | || |||| || | || | || || ||||| | ||||| || ||||| || Sbjct 296804 GCACGTTTGATGTGTCCATCCTGACCATAGATGATGGAATTTTTGAGGTGAAGGCCACAG 296863 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| ||||| || || ||||| || || |||| || Sbjct 296864 CTGGGGATACCCACCTGGGAGGGGAGGACTTTGACAA 296900 >seq975 Length=833997 Score = 125 bits (138), Expect = 3e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || || || || || || || || || |||||| | || Sbjct 558715 AATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCGTC 558656 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | | || || ||||| |||||||||||||||||||||||||| Sbjct 558655 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 558596 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 558595 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAA 558536 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 558535 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 558497 >seq9145 Length=4041 Score = 123 bits (136), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || ||||| || |||||| | || Sbjct 497 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCA 438 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| || || ||||| ||||||||||||||||||||||||| Sbjct 437 GATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAG 378 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 377 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 318 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | |||| | || ||||| | || || ||||| Sbjct 317 ATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGACT 280 >seq2520 Length=369870 Score = 123 bits (136), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || ||||| || |||||| | || Sbjct 183991 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCA 184050 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| || || ||||| ||||||||||||||||||||||||| Sbjct 184051 GATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAG 184110 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 184111 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 184170 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | |||| | || ||||| | || || ||||| Sbjct 184171 ATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGACT 184208 >seq1818 Length=636242 Score = 120 bits (132), Expect = 1e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || || || || || || || || || |||||| | || Sbjct 433228 AATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTC 433169 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | | || || ||||| |||||||||||||||||||||||||| Sbjct 433168 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 433109 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | || || |||| ||||||||| | |||||| | || || || Sbjct 433108 GCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTACAA 433049 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 433048 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 433010 >seq293 Length=1771812 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || | || || || || ||||| || | |||| | || Sbjct 533874 ATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCG 533933 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || ||||| |||||||||||||||||||||||||| Sbjct 533934 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 533993 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || ||||| ||||||||| | ||| || | || || || Sbjct 533994 CAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAAC 534053 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 | | | ||||| | || ||||| | || |||||||| Sbjct 534054 ACTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACT 534091 >seq1 Length=12736304 Score = 109 bits (120), Expect = 2e-18 Identities = 140/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || || || || || || || || || |||||| | || Sbjct 12236887 AATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTC 12236828 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | | || || ||||| |||||||||||||||||||| ||||| Sbjct 12236827 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GATCA 12236769 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 12236768 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAA 12236709 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 12236708 CATTCAAAAGGA 12236697 >seq182 Length=1985155 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| || || || || || || | ||||| | |||| | || Sbjct 1379202 ATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCCTCG 1379143 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 | || || ||| | | | || ||||| |||||||||||||||||||||||||| Sbjct 1379142 GGTACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 1379083 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 1379082 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTACAAC 1379023 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 1379022 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 1378985 >seq1781 Length=688327 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 253687 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 253746 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 253747 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 253799 >seq371 Length=1453275 Score = 93.3 bits (102), Expect = 2e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || | || || || || ||||| || |||||||| || Sbjct 449570 ATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAATCCTCA 449629 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 | || | ||| | | || || || || |||||||||||||||||||||||||| Sbjct 449630 GGTACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 449689 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || ||||| ||||| || ||||||| || || | Sbjct 449690 CA--GACTGATATTCACTGGCAAGCAACTGGAAGACAGACAAACTTTGTGTGACTACAGC 449747 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 449748 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 449785 >seq4269 Length=157414 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 25143 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAACG 25086 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 25085 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 25026 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | |||||||||||||| |||| ||| ||||| || ||| Sbjct 25025 CAAATGCTGCCATTACTGTTAATATTTGGATGACAAATTCTTGTTGTAAATGCAACCTTA 24966 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 24965 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 24906 Query 96287 TAGGG 96291 || || Sbjct 24905 TATGG 24901 >seq124 Length=2465673 Score = 89.7 bits (98), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || |||||||| |||||| | || Sbjct 2104773 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTTGAGGTTGAACCCTCA 2104714 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 |||| || ||| | | || || ||||| |||||||||||||||||||||||| Sbjct 2104713 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 2104657 >seq1095 Length=763602 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||||| Sbjct 577805 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 577864 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 577865 ACAGCTGCTGCTCTGGCCTATGGTCTAGACAAATCAGAAGA 577905 >seq168 Length=2212426 Score = 87.8 bits (96), Expect = 7e-12 Identities = 153/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 1567087 TGCAATGTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 1567030 Query 96107 GATAAAAGTACTTTACTAAT-GTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 |||||||| |||||| ||| |||||| || || ||| | | |||||||||| | Sbjct 1567029 GATAAAAGAACTTTAGAAATAGTTTAA-GCAGGAGACCACTGTAATCTTAAAATATCAAG 1566971 Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225 |||||| || || | ||||||||||||||||||| ||||| ||| || || Sbjct 1566970 ACAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTTT-AATGCAACCTT 1566912 Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 ||| | || | || |||||| ||||||| |||| Sbjct 1566911 AGGTAGTTTGAAAGGGTAGTCTGTAGGAAAATGAATT 1566875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975295379550788