Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq377 129 1e-24 seq293 127 5e-24 seq9145 123 6e-23 seq2520 123 6e-23 seq788 118 2e-21 seq304 109 1e-18 seq322 96.9 8e-15 seq203 93.3 9e-14 seq371 89.7 1e-12 seq591 87.8 4e-12 seq457 84.2 5e-11 >seq377 Length=1354867 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||| |||||||| || ||||||||||| | |||||| | |||||||| Sbjct 824192 AACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTC 824251 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| | || |||||||| | || ||||| || || ||||| ||||| | ||| Sbjct 824252 CATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTG 824311 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||| || || ||||||||||| ||| ||||| || ||||| | || Sbjct 824312 GATATTCGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGT 824368 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || || ||||| | ||||| Sbjct 824369 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824401 >seq293 Length=1771812 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| || ||||| |||||||||||||| |||||| | ||||| || | ||||| | Sbjct 534091 AGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAGAGTGCGT 534032 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| | || || || || |||||||| ||||| Sbjct 534031 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCC 533972 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || ||||| || ||| || || || || || ||||| ||| | || || || Sbjct 533971 TTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTG 533912 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || | | |||||| ||||| | ||||| Sbjct 533911 ATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCAT 533874 >seq9145 Length=4041 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||| | |||||||| ||||| || | | ||| | Sbjct 280 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 339 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| || || || |||||||| ||||| Sbjct 340 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 399 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | ||||| || ||| | || || || || || || ||| || || || || Sbjct 400 TTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTG 459 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 460 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 497 >seq2520 Length=369870 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||| | |||||||| ||||| || | | ||| | Sbjct 184208 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 184149 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| || || || |||||||| ||||| Sbjct 184148 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 184089 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | ||||| || ||| | || || || || || || ||| || || || || Sbjct 184088 TTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTG 184029 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 184028 ATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 183991 >seq788 Length=1000743 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || ||||| || || | ||||| | |||||||| ||||| Sbjct 445020 GTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCCAGCTG 445079 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || | || || || ||||| || || ||||| || |||||||| ||||| Sbjct 445080 TTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTT 445139 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||||||||||| ||| || || |||||||| | ||||| || Sbjct 445140 GGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTCTTGCC 445196 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 445197 CGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq304 Length=1579526 Score = 109 bits (120), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTA-ATCGGCAAGAGTTCT 194981 |||||||| ||||| |||||||||||||| |||||||| ||||| || | ||| ||| | Sbjct 417591 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAA-AGTACA 417649 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| | || ||||| || || ||||| |||| || || || ||||||| |||| Sbjct 417650 TTCATCTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACGAGGAATTTCTTC 417709 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || || | || |||| ||| || ||||| || Sbjct 417710 CTTATCCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAGGGTTCAACCTCAAGAGT 417769 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT--ATGGT 195147 | |||| || | ||||| ||||| | ||||||| ||||| Sbjct 417770 GATAGTCTACTTGGTAAGGGTTTTCACGAAAATCTGCATTTTGATGGT 417817 >seq322 Length=1513654 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || ||||| || || | ||||| | |||||||| ||||| Sbjct 277536 GTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGCTG 277477 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || | || | || ||||| || || ||||| || | |||||| ||||| Sbjct 277476 TTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGGATTTT 277417 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||| ||||||| ||| || || || ||||| | ||||| || Sbjct 277416 GGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCGACCTC-AGGGTGATGGTCTTGCC 277361 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || || || || | ||||| Sbjct 277360 TGTGAGGGTCTTCACAAAGATCTGCAT 277334 >seq203 Length=1941613 Score = 93.3 bits (102), Expect = 9e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||| | | ||||| || || | || || | ||| |||| ||||| Sbjct 1855980 GTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTG 1856037 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || ||||| || || ||| | || |||||||| ||||| Sbjct 1856038 TTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTT 1856097 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||||||||||| ||| || || || ||||| | |||| || Sbjct 1856098 GGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGTTCTTGCC 1856154 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| | ||||| Sbjct 1856155 CGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq371 Length=1453275 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| |||| || | |||| Sbjct 449785 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACACAAAGTTTGT 449726 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | ||||| || ||||| || | ||| || |||| || || || |||||||| ||||| Sbjct 449725 CTGTCTTCCAGTTGCTTGCCAGTGAATATCAGTC--TGCTGATCAGGAGGAATTCCTTCC 449668 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || | || ||| || || || || Sbjct 449667 TTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAACCTCGAGAGTG 449608 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || | | ||||| || || | ||||| Sbjct 449607 ATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 449570 >seq591 Length=1213786 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 || || ||| |||| | || ||||| || | |||| | |||||||| |||||||| Sbjct 33695 AGGGTTGACACTTTCCGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTG 33636 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 ||||| ||||| || | || ||| | | || ||||||||||| || || | || | Sbjct 33635 CCTGCAAAGATGAGCCTCTGCTGGCCACGGGGGATGCCTTCTTTATCCTGGGTCTTGGCC 33576 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||| ||||| || ||| |||||| || ||||| | ||||| | ||| Sbjct 33575 TTCACATTCTTCATGGTATC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTACAGGTC 33519 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 | || || | ||| || ||||||| Sbjct 33518 AGGGTCTTCATGAAGACCTGCATTT 33494 >seq457 Length=1382432 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||| || | |||| | ||||| || Sbjct 946296 ACCAGGTGCAGGGTGGACTCTTTCTGGCTACTGTGGTCTGAGAGAGCGCGGCCATCCTCC 946237 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||| | || | || ||||| ||||| ||||| ||||||||||| Sbjct 946236 AGCTGTTTGCCCGCAAAGGTCAGATGCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGG 946177 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||| |||| | |||| ||||||| Sbjct 946176 GTTTTGGCTTTGATGGTCTCGGTGGTGTC 946148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109244049241337