Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq788 127 1e-24
seq203 116 2e-21
seq322 102 5e-17
seq541 100 2e-16
seq377 95.1 8e-15
seq1309 93.3 3e-14
seq176 82.4 5e-11
>seq788
Length=1000743
Score = 127 bits (140), Expect = 1e-24
Identities = 156/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || |||||||| || || | || |||| |||
Sbjct 445015 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCC 445074
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| | || || |||||||| |||| | |||||||||||
Sbjct 445075 AGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 445134
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | |||| || ||| || || | ||| ||||| |
Sbjct 445135 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 445192
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || ||||||||||||||||||||
Sbjct 445193 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq203
Length=1941613
Score = 116 bits (128), Expect = 2e-21
Identities = 142/192 (74%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851
|| |||| || |||||||| || ||| | || || | ||||||||||| || ||||| |
Sbjct 1855992 CTCTCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAA 1856051
Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911
| || || |||||||| |||| | |||||||||| || || |||||| ||
Sbjct 1856052 TCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATT 1856109
Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
|| || | |||| || |||||| |||| ||| ||| | || ||||| || ||||||||
Sbjct 1856110 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCAC 1856169
Query 34970 AAAGATCTGCAT 34981
|||||||||||
Sbjct 1856170 GAAGATCTGCAT 1856181
>seq322
Length=1513654
Score = 102 bits (112), Expect = 5e-17
Identities = 151/211 (72%), Gaps = 5/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| || |||||||| || || | | |||| ||
Sbjct 277541 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCT 277482
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| | || | |||||||| |||| | ||||||| |||
Sbjct 277481 AGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGG 277422
Query 34893 ATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || | | |||| || ||| || || | ||| ||||| |
Sbjct 277421 ATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCT 277365
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || ||||| ||||||||||||||||||||
Sbjct 277364 TGCCTGTGAGGGTCTTCACAAAGATCTGCAT 277334
>seq541
Length=1170729
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | | ||||| ||| | || |||||||| ||||| || || |||
Sbjct 610506 CCACCCCTCAGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 610565
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| |||||||| || || ||||| || || | |||||||| | ||
Sbjct 610566 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 610625
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||| || || ||||| || ||| | | || | |||| || ||| ||
Sbjct 610626 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 610685
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| | ||| ||||| || || || || |||||||| ||||||||||| ||
Sbjct 610686 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 610735
>seq377
Length=1354867
Score = 95.1 bits (104), Expect = 8e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| || ||||| ||| | || |||||||| |||||||| || |||
Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| |||||||| || || ||||| || || | |||||||| | ||
Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||| || || ||||| || || | | || | |||| || ||| ||
Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| | || ||||| || || || || |||||||| ||||||||||| ||
Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 824632
>seq1309
Length=750738
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/211 (72%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAG-GCTTCGTTCATCATC 34831
|||||||| | ||| |||||||| || |||||| | || | || | | |||| ||
Sbjct 105687 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAGGGAGCGTGGC-CATCCTC 105745
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||||| || ||| | || || | |||||||| |||| | |||||||||||
Sbjct 105746 -AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 105804
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| | || | || |||| || ||| || |||| ||| || || |
Sbjct 105805 GATTTTGGCTTTGACATTTT-TAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGTCT 105863
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||| | |||||||||||||||||||||||
Sbjct 105864 TGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894
>seq176
Length=2148545
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| || || ||||| | || |||| |||||||| || | ||||||
Sbjct 212412 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 212353
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA-ATCTTCTGTTTGACGGA 34909
|| || | | |||||| || || | |||||||| || ||||| || ||
Sbjct 212352 ATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATCCTGGATCTTGGCCTTCACATT 212293
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | || | |||| || ||| || || | ||| ||||| || | || || |||||||
Sbjct 212292 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAT 212233
Query 34970 AAAGATCTGCAT 34981
|||||||||||
Sbjct 212232 GAAGATCTGCAT 212221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324567483396408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |