Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq788 127 1e-24 seq203 116 2e-21 seq322 102 5e-17 seq541 100 2e-16 seq377 95.1 8e-15 seq1309 93.3 3e-14 seq176 82.4 5e-11 >seq788 Length=1000743 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || |||||||| || || | || |||| ||| Sbjct 445015 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCC 445074 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| | || || |||||||| |||| | ||||||||||| Sbjct 445075 AGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 445134 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 445135 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 445192 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||||||| Sbjct 445193 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq203 Length=1941613 Score = 116 bits (128), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 || |||| || |||||||| || ||| | || || | ||||||||||| || ||||| | Sbjct 1855992 CTCTCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAA 1856051 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || |||||||| |||| | |||||||||| || || |||||| || Sbjct 1856052 TCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATT 1856109 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | |||| || |||||| |||| ||| ||| | || ||||| || |||||||| Sbjct 1856110 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCAC 1856169 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 1856170 GAAGATCTGCAT 1856181 >seq322 Length=1513654 Score = 102 bits (112), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| || |||||||| || || | | |||| || Sbjct 277541 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCT 277482 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| | || | |||||||| |||| | ||||||| ||| Sbjct 277481 AGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGG 277422 Query 34893 ATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | | |||| || ||| || || | ||| ||||| | Sbjct 277421 ATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCT 277365 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| |||||||||||||||||||| Sbjct 277364 TGCCTGTGAGGGTCTTCACAAAGATCTGCAT 277334 >seq541 Length=1170729 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| ||| | || |||||||| ||||| || || ||| Sbjct 610506 CCACCCCTCAGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 610565 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 610566 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 610625 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || ||||| || ||| | | || | |||| || ||| || Sbjct 610626 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 610685 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || |||||||| ||||||||||| || Sbjct 610686 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 610735 >seq377 Length=1354867 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| || ||||| ||| | || |||||||| |||||||| || ||| Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || ||||| || || | | || | |||| || ||| || Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || ||||| || || || || |||||||| ||||||||||| || Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 824632 >seq1309 Length=750738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAG-GCTTCGTTCATCATC 34831 |||||||| | ||| |||||||| || |||||| | || | || | | |||| || Sbjct 105687 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAGGGAGCGTGGC-CATCCTC 105745 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||| || ||| | || || | |||||||| |||| | ||||||||||| Sbjct 105746 -AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 105804 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| | || | || |||| || ||| || |||| ||| || || | Sbjct 105805 GATTTTGGCTTTGACATTTT-TAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGTCT 105863 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| | ||||||||||||||||||||||| Sbjct 105864 TGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894 >seq176 Length=2148545 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || | |||||| Sbjct 212412 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 212353 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA-ATCTTCTGTTTGACGGA 34909 || || | | |||||| || || | |||||||| || ||||| || || Sbjct 212352 ATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATCCTGGATCTTGGCCTTCACATT 212293 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || ||| || || | ||| ||||| || | || || ||||||| Sbjct 212292 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAT 212233 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 212232 GAAGATCTGCAT 212221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324567483396408