Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19 313 3e-80 seq3332 246 3e-60 seq674 120 3e-22 seq878 111 2e-19 seq348 107 2e-18 >seq19 Length=4596781 Score = 313 bits (346), Expect = 3e-80 Identities = 641/939 (68%), Gaps = 23/939 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC-ATTAGAATTCATTACTCCCATTT 18670 ||| || ||| ||||||| | ||||||||||| || ||| || ||| |||||||| Sbjct 3964761 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGA---CATCACTCCCATCC 3964817 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 | ||||| || | ||||| ||||||||||| || || || | ||| ||| | Sbjct 3964818 TCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATTCT 3964872 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| || ||||||||||||| ||| | | | || || |||| || | | | Sbjct 3964873 CCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAA 3964932 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 ||| || || || || | |||||| ||||| | |||||||| | || | | Sbjct 3964933 GTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAGCT 3964992 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 | ||||| | | || || || || | || ||||| || || | | ||| | || Sbjct 3964993 TCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT-TAATA-ATTAT 3965050 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTA-TAGA--AGATGTTTAAACATCAAACATGCAA 18967 | | | || ||| | || | ||| | | || || ||||| ||||||| || |||| Sbjct 3965051 TTCCTTCACTCTCTGC-TTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAA 3965109 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||| ||||| || || | |||||| ||||| || | ||||||| Sbjct 3965110 AGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAGGCA 3965168 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 |||| | | ||| || | ||||||||| | ||||| || ||||||||||| || |||| Sbjct 3965169 TCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTT 3965228 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||| | || | | ||| || || |||| || || | | |||| | Sbjct 3965229 CCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAAT 3965288 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| || |||||| |||||||| |||||||||| | | || || ||| Sbjct 3965289 GCAAGGCCCAGTCTGCCTTC---TTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAA 3965345 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || || | ||||||||| || || || | | ||||||||| || |||| Sbjct 3965346 ATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAAT 3965405 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || || || ||||| | |||||||| ||||| |||| Sbjct 3965406 GGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTT 3965465 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | ||| | || ||||| |||||||| ||||| |||||||| | |||| || | Sbjct 3965466 CTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAG 3965525 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGG-TTAATGTATTCC-AATCATTAAT 19445 | | || || ||| || || | || || ||| || | | ||||| | | ||| Sbjct 3965526 CCAGAAC--GTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAAT 3965583 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 || || || | ||| || |||||| |||||||||| |||||||| ||||| | |||||| Sbjct 3965584 GTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACAT 3965643 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | || | | ||| || || ||||| Sbjct 3965644 CTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 246 bits (272), Expect = 3e-60 Identities = 636/949 (67%), Gaps = 25/949 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||| | ||||||||||| | || || || ||| ||||| || Sbjct 149026 TTATAAGTCAGTATCCACGGTAAAAGAATTCTTTG--TTGGACTTGACATCACTCCTATC 148969 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| | | | |||| || |||||||| ||||| || || || | ||| ||| Sbjct 148968 CTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 148909 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATT-CTAA-TA 18787 ||||||| ||||||||||||| ||| | | | || | || |||| || ||| || Sbjct 148908 TCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTA 148849 Query 18788 GTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATT 18846 |||| || || | |||| |||||| || || | | || || ||||| || || Sbjct 148848 --AGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CAGTTCATCCCAATG 148792 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | || || || | || | || || || || || ||||| | || || | ||||| Sbjct 148791 AGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAACAGCAT-TGATAGT 148733 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAAACATCAAACAT 18963 || | | | || ||| | | | ||| | || || || ||||| ||||||| || Sbjct 148732 -TATTTCCTTCACTCTCTGCTCT-GAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAG 148675 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT-GTTAAACC 19022 ||||| | | |||| ||||| ||||| || || | ||||| ||||| || | || Sbjct 148674 GCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCC 148615 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||||||| | | ||| || | ||||||||| || ||| | || ||| ||||| | || Sbjct 148614 AGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGAT 148555 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||| || ||||| | || | ||| || || |||| || || | || Sbjct 148554 TCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAAC 148495 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 ||| || |||||||| |||||||| || |||| ||||||||||| || | || || Sbjct 148494 CCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAA 148435 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 ||| | ||| | | |||||||| ||| | || | | | ||| |||| || Sbjct 148434 GAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTC 148375 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||| || ||||| || || || || || || || ||||| | |||||||| ||||| Sbjct 148374 AGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTG 148315 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 ||||| | | | | || ||||| |||||||| ||| | ||| |||| | ||||| Sbjct 148314 AACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAA 148255 Query 19383 AAATGC--TAAT----ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CC 19435 || || ||| || || ||||||| | | || || | | || | ||| || Sbjct 148254 GAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAG-GCTTCAGCGATTCCC 148196 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | | ||| || || || | || || |||||| |||||||||| |||||||| |||| Sbjct 148195 AGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 148136 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||| | ||| | ||| | || | ||||| || || ||||| Sbjct 148135 TCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087 >seq674 Length=1058379 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || |||||||| ||| Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 558129 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 558128 ACCACTCTTTCCCC 558115 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || || Sbjct 573945 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 573886 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 573885 CATAAAATCAAAGGGATTTT 573866 >seq878 Length=898115 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 679034 CCACAACCCGTTCTCC 679019 Score = 109 bits (120), Expect = 6e-19 Identities = 113/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 680879 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 680822 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 680821 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 680762 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 680761 TCCATAAAGTCAAATGGATTTTCTAC 680736 >seq348 Length=1658837 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || ||||| ||||| || || Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 305565 TTTCTTATACCATA 305552 Score = 100 bits (110), Expect = 3e-16 Identities = 126/172 (73%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || |||||||||||||| || | ||| ||| |||| || | ||| || || | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | || ||| Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 308255 Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || |||| || ||||| || || ||||||| ||| || | ||| || || Sbjct 308254 TTTTCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 308203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561991382498040