Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq19 313 3e-80
seq3332 246 3e-60
seq674 120 3e-22
seq878 111 2e-19
seq348 107 2e-18
>seq19
Length=4596781
Score = 313 bits (346), Expect = 3e-80
Identities = 641/939 (68%), Gaps = 23/939 (2%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC-ATTAGAATTCATTACTCCCATTT 18670
||| || ||| ||||||| | ||||||||||| || ||| || ||| ||||||||
Sbjct 3964761 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGA---CATCACTCCCATCC 3964817
Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730
| ||||| || | ||||| ||||||||||| || || || | ||| ||| |
Sbjct 3964818 TCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATTCT 3964872
Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790
|||| || ||||||||||||| ||| | | | || || |||| || | | |
Sbjct 3964873 CCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAA 3964932
Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850
||| || || || || | |||||| ||||| | |||||||| | || | |
Sbjct 3964933 GTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAGCT 3964992
Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910
| ||||| | | || || || || | || ||||| || || | | ||| | ||
Sbjct 3964993 TCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT-TAATA-ATTAT 3965050
Query 18911 ATACAACTCTATCTTCATTAGGAGGGTA-TAGA--AGATGTTTAAACATCAAACATGCAA 18967
| | | || ||| | || | ||| | | || || ||||| ||||||| || ||||
Sbjct 3965051 TTCCTTCACTCTCTGC-TTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAA 3965109
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
| ||||| |||| ||||| ||||| || || | |||||| ||||| || | |||||||
Sbjct 3965110 AGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAGGCA 3965168
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
|||| | | ||| || | ||||||||| | ||||| || ||||||||||| || ||||
Sbjct 3965169 TCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTT 3965228
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147
| || || ||||| | || | | ||| || || |||| || || | | |||| |
Sbjct 3965229 CCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAAT 3965288
Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207
|| ||||| || |||||| |||||||| |||||||||| | | || || |||
Sbjct 3965289 GCAAGGCCCAGTCTGCCTTC---TTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAA 3965345
Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267
| | || || | ||||||||| || || || | | ||||||||| || ||||
Sbjct 3965346 ATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAAT 3965405
Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327
| || ||||| || || || || || || || ||||| | |||||||| ||||| ||||
Sbjct 3965406 GGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTT 3965465
Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387
| | ||| | || ||||| |||||||| ||||| |||||||| | |||| || |
Sbjct 3965466 CTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAG 3965525
Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGG-TTAATGTATTCC-AATCATTAAT 19445
| | || || ||| || || | || || ||| || | | ||||| | | |||
Sbjct 3965526 CCAGAAC--GTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAAT 3965583
Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505
|| || || | ||| || |||||| |||||||||| |||||||| ||||| | ||||||
Sbjct 3965584 GTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACAT 3965643
Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
| ||| |||||| | || | | ||| || || |||||
Sbjct 3965644 CTGCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq3332
Length=249688
Score = 246 bits (272), Expect = 3e-60
Identities = 636/949 (67%), Gaps = 25/949 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||| | ||||||||||| | || || || ||| ||||| ||
Sbjct 149026 TTATAAGTCAGTATCCACGGTAAAAGAATTCTTTG--TTGGACTTGACATCACTCCTATC 148969
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| | | | |||| || |||||||| ||||| || || || | ||| |||
Sbjct 148968 CTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 148909
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATT-CTAA-TA 18787
||||||| ||||||||||||| ||| | | | || | || |||| || ||| ||
Sbjct 148908 TCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTA 148849
Query 18788 GTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATT 18846
|||| || || | |||| |||||| || || | | || || ||||| || ||
Sbjct 148848 --AGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CAGTTCATCCCAATG 148792
Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906
| || || || | || | || || || || || ||||| | || || | |||||
Sbjct 148791 AGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAACAGCAT-TGATAGT 148733
Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAAACATCAAACAT 18963
|| | | | || ||| | | | ||| | || || || ||||| ||||||| ||
Sbjct 148732 -TATTTCCTTCACTCTCTGCTCT-GAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAG 148675
Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT-GTTAAACC 19022
||||| | | |||| ||||| ||||| || || | ||||| ||||| || | ||
Sbjct 148674 GCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCC 148615
Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082
||||||||| | | ||| || | ||||||||| || ||| | || ||| ||||| | ||
Sbjct 148614 AGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGAT 148555
Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142
||||| || ||||| | || | ||| || || |||| || || | ||
Sbjct 148554 TCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAAC 148495
Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202
||| || |||||||| |||||||| || |||| ||||||||||| || | || ||
Sbjct 148494 CCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAA 148435
Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262
||| | ||| | | |||||||| ||| | || | | | ||| |||| ||
Sbjct 148434 GAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTC 148375
Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322
||||| || ||||| || || || || || || || ||||| | |||||||| |||||
Sbjct 148374 AGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTG 148315
Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382
||||| | | | | || ||||| |||||||| ||| | ||| |||| | |||||
Sbjct 148314 AACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAA 148255
Query 19383 AAATGC--TAAT----ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CC 19435
|| || ||| || || ||||||| | | || || | | || | ||| ||
Sbjct 148254 GAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAG-GCTTCAGCGATTCCC 148196
Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495
| | | ||| || || || | || || |||||| |||||||||| |||||||| ||||
Sbjct 148195 AGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 148136
Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
| ||| |||| | ||| | ||| | || | ||||| || || |||||
Sbjct 148135 TCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087
>seq674
Length=1058379
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | || ||||| || |||||||| |||
Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||||||
Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 558129
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 558128 ACCACTCTTTCCCC 558115
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
|||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || ||
Sbjct 573945 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 573886
Query 18732 CATAAAATCAAATGGATTTT 18751
|||||||||||| |||||||
Sbjct 573885 CATAAAATCAAAGGGATTTT 573866
>seq878
Length=898115
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| || || |||||||
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 679034 CCACAACCCGTTCTCC 679019
Score = 109 bits (120), Expect = 6e-19
Identities = 113/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||
Sbjct 680879 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 680822
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 680821 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 680762
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 680761 TCCATAAAGTCAAATGGATTTTCTAC 680736
>seq348
Length=1658837
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || || || ||||| ||||| || ||
Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 305565 TTTCTTATACCATA 305552
Score = 100 bits (110), Expect = 3e-16
Identities = 126/172 (73%), Gaps = 6/172 (3%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || |||||||||||||| || | ||| ||| |||| || | ||| || || |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | |||||| || |||||||| || |||||||| ||||||||||| | || |||
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 308255
Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
|| |||| || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 308254 TTTTCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 308203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561991382498040
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