Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq377 105 5e-18
seq541 100 2e-16
seq2471 84.2 2e-11
>seq377
Length=1354867
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || || ||||| | | ||| | | |||| |||| |||
Sbjct 824427 TGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 824486
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| || | | ||| || || || || ||||| ||||||||||| || ||
Sbjct 824487 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 824546
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| |||| | |||||| | ||||| || || | || || |||||||||
Sbjct 824547 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTCTTGCCGGTT 824606
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 824607 AGGGTCTTCACGAAGATCTGCAT 824629
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || ||||| || ||||||||||| | | ||| | | |||| |||| |||
Sbjct 824199 TGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGC 824258
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| | ||||| || | | ||| || || || || ||||| ||||||| ||| || ||
Sbjct 824259 TTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGGATATTC 824318
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| |||| | |||||| | ||||| || || |||| || |||||||||
Sbjct 824319 GCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTT 824378
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || || || |||||||||
Sbjct 824379 AGGGTCTTCACGAAGATCTGCATG 824402
>seq541
Length=1170729
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 610530 TGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 610589
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| || | | ||| || || || || ||||| ||||||||||| || ||
Sbjct 610590 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 610649
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || |||| | |||||| | ||||| || || |||| || ||||||||
Sbjct 610650 GCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 610709
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 610710 AGGGTCTTCACGAAGATCTGCAT 610732
>seq2471
Length=386077
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/204 (70%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || |||| || || |||||||| | | ||| | |||| |||| |||
Sbjct 121950 TGCAGAGTTGACCCTTTCTGGATGTTGTAATCAGAAA-AGTGAGGCCATCTTCCAGCTGC 122008
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAA-TGCCTTCTTTATCTTGAATTTT 101385
|| |||||||| || | | ||| || || | || | |||||||||||||||| || ||
Sbjct 122009 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGTACTGCCTTCTTTATCTTGGATCTT 122068
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | | | |||||| | |||||| || ||||||| || ||||||||
Sbjct 122069 AGCCTTCACATTCTTGATGGTGTCACGGGGTTCCACCTCTAGAGTGATAGTCTTGCCGGT 122128
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
||| | ||||| ||||||||
Sbjct 122129 --CAGTCCTCACAAAGATCTGCAT 122150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396197691835827
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |