Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq377 105 5e-18 seq541 100 2e-16 seq2471 84.2 2e-11 >seq377 Length=1354867 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || || ||||| | | ||| | | |||| |||| ||| Sbjct 824427 TGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 824486 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||| ||||||||||| || || Sbjct 824487 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 824546 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| || || | || || ||||||||| Sbjct 824547 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTCTTGCCGGTT 824606 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 824607 AGGGTCTTCACGAAGATCTGCAT 824629 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || ||||||||||| | | ||| | | |||| |||| ||| Sbjct 824199 TGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGC 824258 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || | ||||| || | | ||| || || || || ||||| ||||||| ||| || || Sbjct 824259 TTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGGATATTC 824318 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| || || |||| || ||||||||| Sbjct 824319 GCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTT 824378 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 824379 AGGGTCTTCACGAAGATCTGCATG 824402 >seq541 Length=1170729 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 610530 TGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 610589 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||| ||||||||||| || || Sbjct 610590 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 610649 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || |||| | |||||| | ||||| || || |||| || |||||||| Sbjct 610650 GCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 610709 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 610710 AGGGTCTTCACGAAGATCTGCAT 610732 >seq2471 Length=386077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || |||| || || |||||||| | | ||| | |||| |||| ||| Sbjct 121950 TGCAGAGTTGACCCTTTCTGGATGTTGTAATCAGAAA-AGTGAGGCCATCTTCCAGCTGC 122008 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAA-TGCCTTCTTTATCTTGAATTTT 101385 || |||||||| || | | ||| || || | || | |||||||||||||||| || || Sbjct 122009 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGTACTGCCTTCTTTATCTTGGATCTT 122068 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | | | |||||| | |||||| || ||||||| || |||||||| Sbjct 122069 AGCCTTCACATTCTTGATGGTGTCACGGGGTTCCACCTCTAGAGTGATAGTCTTGCCGGT 122128 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||| | ||||| |||||||| Sbjct 122129 --CAGTCCTCACAAAGATCTGCAT 122150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396197691835827