Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq975 96.9 3e-15
seq9145 89.7 4e-13
seq2520 89.7 4e-13
seq788 89.7 4e-13
seq1818 87.8 1e-12
seq293 87.8 1e-12
seq1 82.4 6e-11
>seq975
Length=833997
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || || ||| |||||||| ||||| ||||| | | | || | ||
Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| ||
Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| |||||| | | | || |||| || ||||| | || || ||
Sbjct 558622 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 558681
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| | ||||| || |||||||||||
Sbjct 558682 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714
>seq9145
Length=4041
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || ||| | | |||||||| ||||| ||||| | | | || | ||
Sbjct 285 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 344
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| |
Sbjct 345 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 404
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| |||| | | | | ||||| | || ||||| | || || ||
Sbjct 405 CTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGT 464
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||||| | ||||| || |||||||||||| ||
Sbjct 465 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 501
>seq2520
Length=369870
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || ||| | | |||||||| ||||| ||||| | | | || | ||
Sbjct 184203 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 184144
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| |
Sbjct 184143 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 184084
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| |||| | | | | ||||| | || ||||| | || || ||
Sbjct 184083 CTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGT 184024
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||||| | ||||| || |||||||||||| ||
Sbjct 184023 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 183987
>seq788
Length=1000743
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| |||| ||| || | |||||| || || ||| |||||| || ||||| || || ||
Sbjct 444996 GCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGA 445055
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| ||| || || ||||| | ||| ||||| || || | ||
Sbjct 445056 CAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGG 445115
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||||||| || || ||| ||| | | | || | ||| ||
Sbjct 445116 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 445175
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||| | || || || || ||||||| || || ||||| |||||||||
Sbjct 445176 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATC 445224
>seq1818
Length=636242
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || || ||| |||||||| ||||| ||||| | | | || | ||
Sbjct 433015 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 433074
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| | ||| || ||||| ||||||| ||| ||||| | |||| || ||||| ||
Sbjct 433075 TTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 433134
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| |||||| | | | || || | || ||||| | || || ||
Sbjct 433135 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 433194
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| | ||||| || |||||||||||
Sbjct 433195 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 433227
>seq293
Length=1771812
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614
||||| | ||| || ||| ||| |||||| | ||||| ||||| ||| | || | ||
Sbjct 534085 AACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAGAGTGCGTCCATCT 534026
Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674
|||| ||||| || ||||| |||| || ||| ||||| | |||| || ||||| ||
Sbjct 534025 TCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 533966
Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734
|||||| |||||| | | | || || | || |||| | || || ||
Sbjct 533965 TGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTGATGGTC 533906
Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||| | | |||||| || |||||||||||| ||
Sbjct 533905 TTCCCCATAAGAGTTTTCACGAAAATCTGCATCTTG 533870
>seq1
Length=12736304
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| |||||||| ||||| ||||| | | | || | || |||| ||||| || |||||
Sbjct 12236696 CTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAA 12236755
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||||| ||| ||||| | || || || ||||| || |||||| ||||||
Sbjct 12236756 GATCAGTCTCTGCTGATCGGAGG-AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATT 12236814
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | || ||||| | || || || || ||||| | ||||| ||
Sbjct 12236815 TTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAC 12236874
Query 48755 AAAAATCTGCAT 48766
|||||||||||
Sbjct 12236875 GAAAATCTGCAT 12236886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380860016224653
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |