Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq228 172 1e-37 seq2244 141 2e-28 seq19 107 4e-18 seq348 91.5 3e-13 >seq228 Length=1782712 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 521936 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 521877 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | || || | ||||| || ||||| || | |||||| |||||| Sbjct 521876 TCCCGGAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 521817 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 521816 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 521757 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| || Sbjct 521756 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGGGG 521697 Query 241625 GAC 241627 ||| Sbjct 521696 GAC 521694 >seq2244 Length=425746 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 183950 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 183891 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 183890 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 183831 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| || | ||| || | |||||| || || | ||| || |||||||| Sbjct 183830 TTGCGCTTGCGGCACTTAGAGGCAGCGATGCGGTTACGCAGCCGCTTGCGCTCCGCCTTA 183771 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 183770 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 183738 >seq19 Length=4596781 Score = 107 bits (118), Expect = 4e-18 Identities = 457/710 (64%), Gaps = 28/710 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| || ||||||||||| ||| |||| || || ||||| Sbjct 3964819 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTC-----CCCTTCCAGTGAAATATTCTC 3964873 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTGTCAGGCCCATCTGTTCCAGCA 47957 ||||||| || || || | | | | | | || || || || | ||||||| Sbjct 3964874 CATGAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCCAAAACCTA--GCTCCAGCA 3964929 Query 47958 G--GT-GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || | || || ||| |||| || || | ||| | ||| ||||| | |||| Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||| ||||| | || ||||| ||| ||| ||||||| | ||||| | | | Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTA 3965049 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | ||| || | || || ||||||| | ||| || ||| | | || ||||| Sbjct 3965050 TTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGA---ACATCAGGCAGG 3965106 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||| || || || || | ||| || || | ||||| || || |||| Sbjct 3965107 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAG 3965165 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | | | | ||||||||||| || | ||| ||||| ||||| |||||||| | Sbjct 3965166 GCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTC 3965225 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC-TGAGATC 48313 | ||||| || || || | | || || ||| | | ||| | ||||| || | Sbjct 3965226 CTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCC 3965285 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 | | ||| ||||||||||| |||||| | || ||||| |||| | ||| |||| Sbjct 3965286 AATGCAAG-GCCCAGTCTGC---CTTCTTTACACAAGGCATTGTCTGGAGGGCGTTGAAG 3965341 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATA---GGTAGTGAGCAGCTTTGCGTACATC 48430 || | | || | | || ||| || | | |||| || | ||||||| Sbjct 3965342 AGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACT---GTACATC 3965398 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 ||||| || | || || || || || ||||| || ||||| | ||| || | | Sbjct 3965399 TCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3965458 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540 || |||||| | || | ||||| || || ||||| ||||| ||||| Sbjct 3965459 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 3965508 >seq348 Length=1658837 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 297562 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 297503 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 297502 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 297444 Query 213647 GGAC 213650 ||| Sbjct 297443 AGAC 297440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931338214442240