Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq228 172 1e-37
seq2244 141 2e-28
seq19 107 4e-18
seq348 91.5 3e-13
>seq228
Length=1782712
Score = 172 bits (190), Expect = 1e-37
Identities = 184/243 (76%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 521936 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 521877
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | || || | ||||| || ||||| || | |||||| ||||||
Sbjct 521876 TCCCGGAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 521817
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 521816 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 521757
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| ||
Sbjct 521756 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGGGG 521697
Query 241625 GAC 241627
|||
Sbjct 521696 GAC 521694
>seq2244
Length=425746
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 183950 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 183891
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | ||||||| ||||||||||||||| || |||| |||||| |||||
Sbjct 183890 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 183831
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| || | ||| || | |||||| || || | ||| || ||||||||
Sbjct 183830 TTGCGCTTGCGGCACTTAGAGGCAGCGATGCGGTTACGCAGCCGCTTGCGCTCCGCCTTA 183771
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 183770 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 183738
>seq19
Length=4596781
Score = 107 bits (118), Expect = 4e-18
Identities = 457/710 (64%), Gaps = 28/710 (4%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || ||||| || ||||||||||| ||| |||| || || |||||
Sbjct 3964819 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTC-----CCCTTCCAGTGAAATATTCTC 3964873
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTGTCAGGCCCATCTGTTCCAGCA 47957
||||||| || || || | | | | | | || || || || | |||||||
Sbjct 3964874 CATGAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCCAAAACCTA--GCTCCAGCA 3964929
Query 47958 G--GT-GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
|| | || || ||| |||| || || | ||| | ||| ||||| | ||||
Sbjct 3964930 TAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGA 3964989
Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
| ||| ||||| | || ||||| ||| ||| ||||||| | ||||| | | |
Sbjct 3964990 GCTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTA 3965049
Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
| | ||| || | || || ||||||| | ||| || ||| | | || |||||
Sbjct 3965050 TTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGA---ACATCAGGCAGG 3965106
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
||||||| | ||| || || || || | ||| || || | ||||| || || ||||
Sbjct 3965107 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAG 3965165
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | | | | ||||||||||| || | ||| ||||| ||||| |||||||| |
Sbjct 3965166 GCATCAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTC 3965225
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC-TGAGATC 48313
| ||||| || || || | | || || ||| | | ||| | ||||| || |
Sbjct 3965226 CTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCC 3965285
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
| | ||| ||||||||||| |||||| | || ||||| |||| | ||| ||||
Sbjct 3965286 AATGCAAG-GCCCAGTCTGC---CTTCTTTACACAAGGCATTGTCTGGAGGGCGTTGAAG 3965341
Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATA---GGTAGTGAGCAGCTTTGCGTACATC 48430
|| | | || | | || ||| || | | |||| || | |||||||
Sbjct 3965342 AGAAATTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACT---GTACATC 3965398
Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490
||||| || | || || || || || ||||| || ||||| | ||| || | |
Sbjct 3965399 TCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3965458
Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540
|| |||||| | || | ||||| || || ||||| ||||| |||||
Sbjct 3965459 TGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 3965508
>seq348
Length=1658837
Score = 91.5 bits (100), Expect = 3e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||| | || || |||||||||||||||||| ||| || ||||||||||| |||
Sbjct 297562 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 297503
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| |||||||||||||| |||| || |||||| |||
Sbjct 297502 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 297444
Query 213647 GGAC 213650
|||
Sbjct 297443 AGAC 297440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931338214442240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |