Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19 129 1e-24 seq674 84.2 4e-11 >seq19 Length=4596781 Score = 129 bits (142), Expect = 1e-24 Identities = 405/610 (66%), Gaps = 32/610 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||| ||| | || ||||| || |||||| | ||| Sbjct 3965655 GATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGAT 3965596 Query 25534 CTGGCCAAGGACATGGA-CGGCTGGTA-CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | | | || | | || | || || ||| | || | || Sbjct 3965595 CTTTCCAAGGACATTCAGCACCAGGAATCCCTGAAGCCTGAGGAGAGATACTTTCTATCC 3965536 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| |||| ||||||| | |||||| ||||| || || || || ||| Sbjct 3965535 C--ACGTTCTGGCTTTCTTTGTGCCGAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 3965478 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | || | | ||||| ||| ||| || ||| |||||||| || ||||| || || Sbjct 3965477 GGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 3965420 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GACG--TACATTACAGA 25766 ||| ||||| | || |||||| |||| || || || || ||| ||| ||| ||| Sbjct 3965419 CATGGAAAACATCCATTCTGAGATGTA---CAGTCTCCTCATTGACAGTTACGTTAAAGA 3965363 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || || || || || || ||| || || || || | | |||| | Sbjct 3965362 TTCCGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGTAAAGA---A 3965306 Query 25827 GGCGCGGTGGGCCATGAAGTGGAT---CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 ||| |||||| || | |||| | ||| |||| ||||| | || || ||| | Sbjct 3965305 GGCAGACTGGGCCTTGCATTGGACTGGCGACAA--AGAG-GCTACCTACGGGGAACGGGT 3965249 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 || | ||||||||||||||| || ||||| || ||||| |||||| | || ||||| Sbjct 3965248 TGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTG 3965189 Query 25944 GCTCAAGCAGAAGGGGACC--ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||| || | |||| ||| || ||||| |||||||| || || || ||||| Sbjct 3965188 GCTCAAG--AAACGCGACCTGATG-CCTGGCTGACGTTTTCCAATGAACTTATTAGCAGA 3965132 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 || |||||| | ||| | || |||||||||||| | | || || || |||||||| Sbjct 3965131 GATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA---AACAACTGGTCCACAAA 3965075 Query 26062 CCTTCTCAAG 26071 ||||| |||| Sbjct 3965074 CCTTC-CAAG 3965066 >seq674 Length=1058379 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||||||||||| || || || || ||| || || ||||| || || |||| Sbjct 558125 TGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 558184 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| | ||| || | ||||||||| || |||||||| || ||||||||||| Sbjct 558185 GGCTAAAG-AAAAGAGGTCTCATGCCCGGACTCACGTTTTCCAATGAACTCATCAGCAGA 558243 Query 26002 GACGA 26006 || || Sbjct 558244 GATGA 558248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928650775931840