Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq19 129 1e-24
seq674 84.2 4e-11
>seq19
Length=4596781
Score = 129 bits (142), Expect = 1e-24
Identities = 405/610 (66%), Gaps = 32/610 (5%)
Strand=Plus/Minus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
||||| ||| ||||||| |||| ||| | || ||||| || |||||| | |||
Sbjct 3965655 GATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGAT 3965596
Query 25534 CTGGCCAAGGACATGGA-CGGCTGGTA-CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
|| |||||||||| | | | || | | || | || || ||| | || | ||
Sbjct 3965595 CTTTCCAAGGACATTCAGCACCAGGAATCCCTGAAGCCTGAGGAGAGATACTTTCTATCC 3965536
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| |||| ||||||| | |||||| ||||| || || || || |||
Sbjct 3965535 C--ACGTTCTGGCTTTCTTTGTGCCGAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 3965478
Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709
| || | | ||||| ||| ||| || ||| |||||||| || ||||| || ||
Sbjct 3965477 GGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 3965420
Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GACG--TACATTACAGA 25766
||| ||||| | || |||||| |||| || || || || ||| ||| ||| |||
Sbjct 3965419 CATGGAAAACATCCATTCTGAGATGTA---CAGTCTCCTCATTGACAGTTACGTTAAAGA 3965363
Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826
|| || || || || || ||| || || || || | | |||| |
Sbjct 3965362 TTCCGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGTAAAGA---A 3965306
Query 25827 GGCGCGGTGGGCCATGAAGTGGAT---CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883
||| |||||| || | |||| | ||| |||| ||||| | || || ||| |
Sbjct 3965305 GGCAGACTGGGCCTTGCATTGGACTGGCGACAA--AGAG-GCTACCTACGGGGAACGGGT 3965249
Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943
|| | ||||||||||||||| || ||||| || ||||| |||||| | || |||||
Sbjct 3965248 TGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTG 3965189
Query 25944 GCTCAAGCAGAAGGGGACC--ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
||||||| || | |||| ||| || ||||| |||||||| || || || |||||
Sbjct 3965188 GCTCAAG--AAACGCGACCTGATG-CCTGGCTGACGTTTTCCAATGAACTTATTAGCAGA 3965132
Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061
|| |||||| | ||| | || |||||||||||| | | || || || ||||||||
Sbjct 3965131 GATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA---AACAACTGGTCCACAAA 3965075
Query 26062 CCTTCTCAAG 26071
||||| ||||
Sbjct 3965074 CCTTC-CAAG 3965066
>seq674
Length=1058379
Score = 84.2 bits (92), Expect = 4e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| || ||||||||||| || || || || ||| || || ||||| || || ||||
Sbjct 558125 TGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 558184
Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
|||| ||| | ||| || | ||||||||| || |||||||| || |||||||||||
Sbjct 558185 GGCTAAAG-AAAAGAGGTCTCATGCCCGGACTCACGTTTTCCAATGAACTCATCAGCAGA 558243
Query 26002 GACGA 26006
|| ||
Sbjct 558244 GATGA 558248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928650775931840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |