Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq701 352 3e-92 seq4151 181 1e-40 seq36 107 2e-18 >seq701 Length=996996 Score = 352 bits (390), Expect = 3e-92 Identities = 673/985 (68%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| |||| ||| || || || || Sbjct 243105 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCTGTGTCAAACTTGTTGGC 243164 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || |||| ||||||| || ||| |||| ||||||||||| || Sbjct 243165 AAACAAGTGGTGC---TTGCGTAGCATCCAGTTCAAGTCCCCGGCTCCGAACACGCACAC 243221 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | || || || ||| || ||||| | || || || | || || ||||| Sbjct 243222 AGAACGCACATGGACCCCACGGCAGGGTGGGTAGGGGGCACCCTTGGAAACATCCCCTTC 243281 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | | |||||||| || |||||||| || || || |||||||| || |||| || || | Sbjct 243282 GAAATACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAGACATGTCATACTTCTG 243341 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || | ||| | |||||||| || | || Sbjct 243342 GCTTAAGGACAGTGAGCCTGGGACATCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 243401 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| || || |||| ||| ||||| |||| | |||| || | || Sbjct 243402 ATCCGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGATTTTTTCGTTCTCTAG 243461 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | ||||| || | || |||||||| || ||||| || || | ||| | Sbjct 243462 CACATACCCCACGTACATCCTACTGACCACAAAGTAGGCACTGCCTGAAAACAGAGGTGT 243521 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || ||||| | || | || || || | | Sbjct 243522 TTCGAGAGGAGG-GTGCATTTTGTCAGTCCCCGTGTTCGTCAGCTTCCCATTAACAACTG 243580 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 || |||| |||||||| | | || | | |||||| | || || ||||| ||| Sbjct 243581 TGTAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGT 243640 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| ||||| || |||| | ||| || || ||||| || || | ||||| | Sbjct 243641 TTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCAGGTTGGTTTTAATGGGAAAAT 243700 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | ||||||| | ||||||| ||||||||| | || |||| || ||||| || Sbjct 243701 CCATACCGCAAAGATTTATCAAGTACTTCCAGTCTGCACTCATCCTGTAGAGGTCTTGCA 243760 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || ||||| || || ||||| || || ||||| || |||| || | || Sbjct 243761 TGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCATACACCACACTCTCCAGCTGAC 243820 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 ||||||||||||| ||| ||| || ||| |||| || |||| | |||| |||| | | Sbjct 243821 TGGCCACAAAGACATTACTGAAGCAGGACGCGATGCCAATCACCGCGGCCAAAAAGGA-A 243879 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||||| ||||||||| | ||| || | ||||||||| |||||||| | Sbjct 243880 TC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCTC 243937 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 243938 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATGGGAA 243997 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| ||| || ||| |||| | | || || ||| ||||||| ||| ||| Sbjct 243998 ACTCTTCCTCTTCTTTACTAAGGGGTTGCATGATATATTTCCGCCTCTTGATGAAAGAAT 244057 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 244058 TACAATCTCTGGTCATGTTTATATA 244082 >seq4151 Length=150835 Score = 181 bits (200), Expect = 1e-40 Identities = 228/312 (73%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 168161 GCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCC 168220 ||| | | |||| || ||||| || || || || || |||||||||||| || | || || Sbjct 65693 GCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGCACTTGTAACACCC 65634 Query 168221 TTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGT 168280 ||| ||||||| |||||| ||||| || || | |||||||| ||| ||| ||| || Sbjct 65633 TTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCCAGCTGGGT 65574 Query 168281 TATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGT 168340 ||||| | |||||||| | ||| || || ||||| || ||||||| ||||||||| Sbjct 65573 GATGTTTATCTTGTCTTTATAGGCAGGCTGGACCACAACCCCATGGTTCTTGCTGAAGGT 65514 Query 168341 GGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTT 168400 | ||||||| || ||||| ||||| || |||||||| || || |||| | ||| Sbjct 65513 GACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAATCAAGA---CTTC 65457 Query 168401 ATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATC 168457 |||| | ||||| || ||||| | ||||| || ||||||||| | | | |||| Sbjct 65456 CTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCGGCTTTTTTTCATT 65397 Query 168458 TTGAGTTACGAC 168469 ||| || ||||| Sbjct 65396 TTGGGTCACGAC 65385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || ||| | |||| || || |||| ||| | |||||| || || || |||| ||| Sbjct 68431 GTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCC---TTCCCCACCTGACGCTTG 68375 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 || ||||| || || | || ||| || ||| || || |||||| | || || | Sbjct 68374 GGGTCTTTGACCTGGAGAACGCTCGTGACAGACGTGGTCCCATTGGGGTGAAAGAGAACC 68315 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || ||||| ||||||||||| || | |||||||||| | || ||||| || || || Sbjct 68314 TCAGTACTGTTTTCAATCCCTGACCCAGACACCTTCCAGGAGATCACAGGGGCTGGGCGG 68255 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || | |||||||| || ||||||| Sbjct 68254 GCATTGGCAGAGCAAGTGATATTTA 68230 >seq36 Length=3920178 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 724908 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 724967 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | ||||| | | ||| Sbjct 724968 GGAATATAATTCTCATAATTTTCCCTAGATGGCCCCAGAACAACGGGTACAGAGCCAGCT 725027 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 725028 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 725087 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 725088 AGATAAAATTTGCA 725101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577098626124360