Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq701 352 3e-92
seq4151 181 1e-40
seq36 107 2e-18
>seq701
Length=996996
Score = 352 bits (390), Expect = 3e-92
Identities = 673/985 (68%), Gaps = 11/985 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||||| |||| ||| || || || ||
Sbjct 243105 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCTGTGTCAAACTTGTTGGC 243164
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || |||| ||||||| || ||| |||| ||||||||||| ||
Sbjct 243165 AAACAAGTGGTGC---TTGCGTAGCATCCAGTTCAAGTCCCCGGCTCCGAACACGCACAC 243221
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||||| | || || || ||| || ||||| | || || || | || || |||||
Sbjct 243222 AGAACGCACATGGACCCCACGGCAGGGTGGGTAGGGGGCACCCTTGGAAACATCCCCTTC 243281
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
| | |||||||| || |||||||| || || || |||||||| || |||| || || |
Sbjct 243282 GAAATACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAGACATGTCATACTTCTG 243341
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | | || || || | || || | ||| | |||||||| || | ||
Sbjct 243342 GCTTAAGGACAGTGAGCCTGGGACATCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 243401
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| || || |||| ||| ||||| |||| | |||| || | ||
Sbjct 243402 ATCCGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGATTTTTTCGTTCTCTAG 243461
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | ||||| || | || |||||||| || ||||| || || | ||| |
Sbjct 243462 CACATACCCCACGTACATCCTACTGACCACAAAGTAGGCACTGCCTGAAAACAGAGGTGT 243521
Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| || ||| ||| ||| || ||||| | || | || || || | |
Sbjct 243522 TTCGAGAGGAGG-GTGCATTTTGTCAGTCCCCGTGTTCGTCAGCTTCCCATTAACAACTG 243580
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
|| |||| |||||||| | | || | | |||||| | || || ||||| |||
Sbjct 243581 TGTAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGT 243640
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| |||| ||||| || |||| | ||| || || ||||| || || | ||||| |
Sbjct 243641 TTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCAGGTTGGTTTTAATGGGAAAAT 243700
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710
| ||||||| | ||||||| ||||||||| | || |||| || ||||| ||
Sbjct 243701 CCATACCGCAAAGATTTATCAAGTACTTCCAGTCTGCACTCATCCTGTAGAGGTCTTGCA 243760
Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770
|||| || | || ||||| || || ||||| || || ||||| || |||| || | ||
Sbjct 243761 TGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCATACACCACACTCTCCAGCTGAC 243820
Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827
||||||||||||| ||| ||| || ||| |||| || |||| | |||| |||| | |
Sbjct 243821 TGGCCACAAAGACATTACTGAAGCAGGACGCGATGCCAATCACCGCGGCCAAAAAGGA-A 243879
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
|| || | ||||| ||||||||| | ||| || | ||||||||| |||||||| |
Sbjct 243880 TC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCTC 243937
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
| || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||||
Sbjct 243938 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATGGGAA 243997
Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007
|||| ||| || ||| |||| | | || || ||| ||||||| ||| |||
Sbjct 243998 ACTCTTCCTCTTCTTTACTAAGGGGTTGCATGATATATTTCCGCCTCTTGATGAAAGAAT 244057
Query 161008 CACAATCCCGCGTCATGTTGATATA 161032
|||||| | |||||||| |||||
Sbjct 244058 TACAATCTCTGGTCATGTTTATATA 244082
>seq4151
Length=150835
Score = 181 bits (200), Expect = 1e-40
Identities = 228/312 (73%), Gaps = 6/312 (2%)
Strand=Plus/Minus
Query 168161 GCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCC 168220
||| | | |||| || ||||| || || || || || |||||||||||| || | || ||
Sbjct 65693 GCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGCACTTGTAACACCC 65634
Query 168221 TTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGT 168280
||| ||||||| |||||| ||||| || || | |||||||| ||| ||| ||| ||
Sbjct 65633 TTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCCAGCTGGGT 65574
Query 168281 TATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGT 168340
||||| | |||||||| | ||| || || ||||| || ||||||| |||||||||
Sbjct 65573 GATGTTTATCTTGTCTTTATAGGCAGGCTGGACCACAACCCCATGGTTCTTGCTGAAGGT 65514
Query 168341 GGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTT 168400
| ||||||| || ||||| ||||| || |||||||| || || |||| | |||
Sbjct 65513 GACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAATCAAGA---CTTC 65457
Query 168401 ATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATC 168457
|||| | ||||| || ||||| | ||||| || ||||||||| | | | ||||
Sbjct 65456 CTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCGGCTTTTTTTCATT 65397
Query 168458 TTGAGTTACGAC 168469
||| || |||||
Sbjct 65396 TTGGGTCACGAC 65385
Score = 98.7 bits (108), Expect = 1e-15
Identities = 145/205 (71%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957
|| ||| | |||| || || |||| ||| | |||||| || || || |||| |||
Sbjct 68431 GTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCC---TTCCCCACCTGACGCTTG 68375
Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017
|| ||||| || || | || ||| || ||| || || |||||| | || || |
Sbjct 68374 GGGTCTTTGACCTGGAGAACGCTCGTGACAGACGTGGTCCCATTGGGGTGAAAGAGAACC 68315
Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077
| || ||||| ||||||||||| || | |||||||||| | || ||||| || || ||
Sbjct 68314 TCAGTACTGTTTTCAATCCCTGACCCAGACACCTTCCAGGAGATCACAGGGGCTGGGCGG 68255
Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102
|| | |||||||| || |||||||
Sbjct 68254 GCATTGGCAGAGCAAGTGATATTTA 68230
>seq36
Length=3920178
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| || |||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 724908 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 724967
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || |||||||||| || || || || | ||| | ||||| | | |||
Sbjct 724968 GGAATATAATTCTCATAATTTTCCCTAGATGGCCCCAGAACAACGGGTACAGAGCCAGCT 725027
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||||| |||||||| |||||| || |||| ||||||||||||||||
Sbjct 725028 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 725087
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 725088 AGATAAAATTTGCA 725101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577098626124360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |