Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq975 116 7e-21 seq1818 113 8e-20 seq9145 111 3e-19 seq2520 111 3e-19 seq293 102 1e-16 seq182 89.7 9e-13 seq371 86.0 1e-11 >seq975 Length=833997 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 558506 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCC 558565 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 558566 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 558625 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 558626 ATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTC 558685 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 558686 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 >seq1818 Length=636242 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 433019 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCC 433078 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 433079 AGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 433138 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 433139 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 433198 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 433199 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230 >seq9145 Length=4041 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | ||| || || ||||| || | ||| Sbjct 315 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 374 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| |||||||| |||| || || |||| ||||||||| || || Sbjct 375 CTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTTCTATTGT 434 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||| || ||||| || || || || || || ||||| || || || || Sbjct 435 ATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 494 Query 193358 CATTTT 193363 ||| || Sbjct 495 CATCTT 500 >seq2520 Length=369870 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | ||| || || ||||| || | ||| Sbjct 184173 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 184114 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| |||||||| |||| || || |||| ||||||||| || || Sbjct 184113 CTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTTCTATTGT 184054 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||| || ||||| || || || || || || ||||| || || || || Sbjct 184053 ATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 183994 Query 193358 CATTTT 193363 ||| || Sbjct 183993 CATCTT 183988 >seq293 Length=1771812 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || |||||||| ||||||||||| |||||||| || Sbjct 534029 ATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 533970 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || ||||| || | ||| | || ||||| || Sbjct 533969 ATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTGAT 533910 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || | || ||||| || || || ||||| || Sbjct 533909 GGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871 >seq182 Length=1985155 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 1378994 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATCTTCC 1379053 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 1379054 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 1379113 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| | || |||| || ||| | || | ||| | || || | || || || Sbjct 1379114 ATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGGTCTTC 1379173 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| | || || ||||| || Sbjct 1379174 CCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205 >seq371 Length=1453275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 193237 TCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAG 193296 |||| ||||||||||| |||||||| ||||| || || |||| |||| |||| | | Sbjct 449693 TCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTG 449634 Query 193297 TATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 || | || || ||||| || ||||| || || || || | || ||||| ||||| || | Sbjct 449633 TACCTGAGGATTCAACCTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCT 449574 Query 193357 GCATTTT 193363 |||| || Sbjct 449573 GCATCTT 449567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899466473441520