Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq975 116 7e-21
seq1818 113 8e-20
seq9145 111 3e-19
seq2520 111 3e-19
seq293 102 1e-16
seq182 89.7 9e-13
seq371 86.0 1e-11
>seq975
Length=833997
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || ||| || ||||| || || || | ||| ||
Sbjct 558506 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCC 558565
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| ||
Sbjct 558566 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 558625
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || ||||| || | ||||| || || || || || ||
Sbjct 558626 ATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTC 558685
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| || || || ||||||||
Sbjct 558686 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717
>seq1818
Length=636242
Score = 113 bits (124), Expect = 8e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || ||| || ||||| || || || | ||| ||
Sbjct 433019 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCC 433078
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| || || || ||||| || | |||||| ||||||||||| |||||||| ||||| ||
Sbjct 433079 AGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 433138
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || ||||| || | ||||| || || || || || ||
Sbjct 433139 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 433198
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| || || || ||||||||
Sbjct 433199 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230
>seq9145
Length=4041
Score = 111 bits (122), Expect = 3e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| || ||||| || || || | ||| || | ||| || || ||||| || | |||
Sbjct 315 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 374
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
||| ||||||||||| |||||||| |||| || || |||| ||||||||| || ||
Sbjct 375 CTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTTCTATTGT 434
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| || | ||||| || ||||| || || || || || || ||||| || || || ||
Sbjct 435 ATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 494
Query 193358 CATTTT 193363
||| ||
Sbjct 495 CATCTT 500
>seq2520
Length=369870
Score = 111 bits (122), Expect = 3e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| || ||||| || || || | ||| || | ||| || || ||||| || | |||
Sbjct 184173 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 184114
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
||| ||||||||||| |||||||| |||| || || |||| ||||||||| || ||
Sbjct 184113 CTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTTCTATTGT 184054
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| || | ||||| || ||||| || || || || || || ||||| || || || ||
Sbjct 184053 ATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTG 183994
Query 193358 CATTTT 193363
||| ||
Sbjct 183993 CATCTT 183988
>seq293
Length=1771812
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || || ||||| || |||||||| ||||||||||| |||||||| ||
Sbjct 534029 ATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 533970
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || |||| |||| |||| || ||||| || | ||| | || ||||| ||
Sbjct 533969 ATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAGCCTCGAGAGTGAT 533910
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || | || ||||| || || || ||||| ||
Sbjct 533909 GGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871
>seq182
Length=1985155
Score = 89.7 bits (98), Expect = 9e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || ||| || ||||| || || || | ||| ||
Sbjct 1378994 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATCTTCC 1379053
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| ||
Sbjct 1379054 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 1379113
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| | || |||| || ||| | || | ||| | || || | || || ||
Sbjct 1379114 ATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGGTCTTC 1379173
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| | || || ||||| ||
Sbjct 1379174 CCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205
>seq371
Length=1453275
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 193237 TCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAG 193296
|||| ||||||||||| |||||||| ||||| || || |||| |||| |||| | |
Sbjct 449693 TCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTG 449634
Query 193297 TATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356
|| | || || ||||| || ||||| || || || || | || ||||| ||||| || |
Sbjct 449633 TACCTGAGGATTCAACCTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCT 449574
Query 193357 GCATTTT 193363
|||| ||
Sbjct 449573 GCATCTT 449567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899466473441520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |