Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq975 141 2e-28 seq1818 132 9e-26 seq293 127 4e-24 seq9145 120 6e-22 seq2520 120 6e-22 seq1 120 6e-22 seq182 109 1e-18 seq304 86.0 1e-11 >seq975 Length=833997 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 558487 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 558545 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | |||||| |||||||| | Sbjct 558546 ACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 558605 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| |||| ||| | Sbjct 558606 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAA 558665 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 558666 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 >seq1818 Length=636242 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 433000 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 433058 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || || ||||||||||| | |||||| |||||||| | Sbjct 433059 ACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 433118 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 433119 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAA 433178 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 433179 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230 >seq293 Length=1771812 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | ||| || | ||| | ||| | ||| ||| ||| | || || |||| Sbjct 534101 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAG 534043 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || ||| |||| |||| ||| || ||||||||||| |||||||| |||||||| | Sbjct 534042 ACAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAG 533983 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| Sbjct 533982 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAG 533923 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || | | ||||| | || |||||||| || Sbjct 533922 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871 >seq9145 Length=4041 Score = 120 bits (132), Expect = 6e-22 Identities = 143/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || ||| |||| |||| ||| || |||||||||| Sbjct 309 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 367 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| |||||||| || |||||||| |||| || || || |||| ||| Sbjct 368 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTT 427 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || || ||||| ||||| || || || | ||||| | | Sbjct 428 CTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGA 487 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 488 AAATCTGCATCTT 500 >seq2520 Length=369870 Score = 120 bits (132), Expect = 6e-22 Identities = 143/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || ||| |||| |||| ||| || |||||||||| Sbjct 184179 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 184121 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| |||||||| || |||||||| |||| || || || |||| ||| Sbjct 184120 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTT 184061 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || || ||||| ||||| || || || | ||||| | | Sbjct 184060 CTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGA 184001 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 184000 AAATCTGCATCTT 183988 >seq1 Length=12736304 Score = 120 bits (132), Expect = 6e-22 Identities = 150/202 (74%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 192339 AGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTAC 192397 ||||| ||| ||| || || || || ||||| || || ||| |||| |||| ||| || | Sbjct 12236690 AGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGC 12236748 Query 192398 CAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTT 192457 |||||||||| | |||||| ||||| || || |||||||| ||||| || || || | Sbjct 12236749 CAGCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCT 12236807 Query 192458 TTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG 192517 ||||||| ||| | ||| || | ||| || || || || ||||| || || || | | Sbjct 12236808 TTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGG 12236867 Query 192518 TTTTAATAAATATCTGCATTTT 192539 |||| | || ||||||||||| Sbjct 12236868 TTTTCACGAAAATCTGCATTTT 12236889 >seq182 Length=1985155 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 1378975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 1379033 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| | |||||| |||||||| | Sbjct 1379034 ACAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 1379093 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || | |||||| ||| | | | || | ||| Sbjct 1379094 GAATTCCTTCCTTATCCTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAG 1379153 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || | ||||| || || || | ||||| | || |||||||| || Sbjct 1379154 CCTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205 >seq304 Length=1579526 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || | Sbjct 417581 ACCACCACCAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGATGG 417639 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | |||||| ||| ||| || ||||||||||| | |||||| |||||| | | Sbjct 417640 ACAAAGTACATTCATCTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACGAG 417699 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||| |||| ||||| || || || |||||||| | | | | | || | ||| | Sbjct 417700 GAATTTCTTCCTTATCCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAGGGTTCAA 417759 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATTTT 192539 | || ||||| || | | ||| | ||| ||||| | || ||||||||||| Sbjct 417760 CCTCAAGAGTGATAG-TCTACTTGGTAAGGGTTTTCACGAAAATCTGCATTTT 417811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984269213294850