Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq975 141 2e-28
seq1818 132 9e-26
seq293 127 4e-24
seq9145 120 6e-22
seq2520 120 6e-22
seq1 120 6e-22
seq182 109 1e-18
seq304 86.0 1e-11
>seq975
Length=833997
Score = 141 bits (156), Expect = 2e-28
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || || || || ||||
Sbjct 558487 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 558545
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| | |||||| |||||||| |
Sbjct 558546 ACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 558605
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| |||| ||| |
Sbjct 558606 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAA 558665
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 558666 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717
>seq1818
Length=636242
Score = 132 bits (146), Expect = 9e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || || || || ||||
Sbjct 433000 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 433058
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| || || ||||||||||| | |||||| |||||||| |
Sbjct 433059 ACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 433118
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 433119 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAA 433178
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 433179 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230
>seq293
Length=1771812
Score = 127 bits (140), Expect = 4e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | ||| || | ||| | ||| | ||| ||| ||| | || || ||||
Sbjct 534101 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAG 534043
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | || ||| |||| |||| ||| || ||||||||||| |||||||| |||||||| |
Sbjct 534042 ACAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAG 533983
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | |||
Sbjct 533982 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAG 533923
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || ||||| ||||| || || | | ||||| | || |||||||| ||
Sbjct 533922 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 533871
>seq9145
Length=4041
Score = 120 bits (132), Expect = 6e-22
Identities = 143/193 (74%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || || || ||||| || || ||| |||| |||| ||| || ||||||||||
Sbjct 309 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 367
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | |||||| |||||||| || |||||||| |||| || || || |||| |||
Sbjct 368 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTT 427
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
||| | |||||| | ||| || || ||||| ||||| || || || | ||||| | |
Sbjct 428 CTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGA 487
Query 192527 ATATCTGCATTTT 192539
| |||||||| ||
Sbjct 488 AAATCTGCATCTT 500
>seq2520
Length=369870
Score = 120 bits (132), Expect = 6e-22
Identities = 143/193 (74%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || || || ||||| || || ||| |||| |||| ||| || ||||||||||
Sbjct 184179 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 184121
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | |||||| |||||||| || |||||||| |||| || || || |||| |||
Sbjct 184120 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTT 184061
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
||| | |||||| | ||| || || ||||| ||||| || || || | ||||| | |
Sbjct 184060 CTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGA 184001
Query 192527 ATATCTGCATTTT 192539
| |||||||| ||
Sbjct 184000 AAATCTGCATCTT 183988
>seq1
Length=12736304
Score = 120 bits (132), Expect = 6e-22
Identities = 150/202 (74%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 192339 AGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTAC 192397
||||| ||| ||| || || || || ||||| || || ||| |||| |||| ||| || |
Sbjct 12236690 AGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGC 12236748
Query 192398 CAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTT 192457
|||||||||| | |||||| ||||| || || |||||||| ||||| || || || |
Sbjct 12236749 CAGCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCT 12236807
Query 192458 TTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG 192517
||||||| ||| | ||| || | ||| || || || || ||||| || || || | |
Sbjct 12236808 TTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGG 12236867
Query 192518 TTTTAATAAATATCTGCATTTT 192539
|||| | || |||||||||||
Sbjct 12236868 TTTTCACGAAAATCTGCATTTT 12236889
>seq182
Length=1985155
Score = 109 bits (120), Expect = 1e-18
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || || || || ||||
Sbjct 1378975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 1379033
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | | |||| |||| ||| || ||||||||||| | |||||| |||||||| |
Sbjct 1379034 ACAAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 1379093
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || | |||||| ||| | | | || | |||
Sbjct 1379094 GAATTCCTTCCTTATCCTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAG 1379153
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || | ||||| || || || | ||||| | || |||||||| ||
Sbjct 1379154 CCTCAAGGATGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205
>seq304
Length=1579526
Score = 86.0 bits (94), Expect = 1e-11
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||| | ||| ||| || || || || |
Sbjct 417581 ACCACCACCAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGATGG 417639
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | |||||| ||| ||| || ||||||||||| | |||||| |||||| | |
Sbjct 417640 ACAAAGTACATTCATCTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACGAG 417699
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||| |||| ||||| || || || |||||||| | | | | | || | ||| |
Sbjct 417700 GAATTTCTTCCTTATCCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAGGGTTCAA 417759
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATTTT 192539
| || ||||| || | | ||| | ||| ||||| | || |||||||||||
Sbjct 417760 CCTCAAGAGTGATAG-TCTACTTGGTAAGGGTTTTCACGAAAATCTGCATTTT 417811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984269213294850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |