Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq975 140 6e-28
seq1818 131 3e-25
seq1 111 3e-19
seq304 87.8 3e-12
>seq975
Length=833997
Score = 140 bits (154), Expect = 6e-28
Identities = 175/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 558478 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 558537
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || |||||||| || | |||||| ||
Sbjct 558538 GTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTG 558597
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||| ||||| ||
Sbjct 558598 ATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGA 558657
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||| || || || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 558658 CGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717
>seq1818
Length=636242
Score = 131 bits (144), Expect = 3e-25
Identities = 173/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 432991 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 433050
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| || || |||||||| || | |||||| ||
Sbjct 433051 GTAGTCAGACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTG 433110
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||| ||||| ||
Sbjct 433111 ATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGA 433170
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 433171 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230
>seq1
Length=12736304
Score = 111 bits (122), Expect = 3e-19
Identities = 146/201 (73%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931
||||| ||| || ||| || || || || |||| ||| | || |||| ||| || ||
Sbjct 12236690 AGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCC 12236749
Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991
|||||| || | |||||| || || || || |||||||| ||||| || || || ||
Sbjct 12236750 AGCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTT 12236808
Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
|||||| ||| ||||| || | ||| || || || || ||||| || || || | ||
Sbjct 12236809 TACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 12236868
Query 172052 TTTAATGAATATCTGCATTTT 172072
||| | ||| |||||||||||
Sbjct 12236869 TTTCACGAAAATCTGCATTTT 12236889
>seq304
Length=1579526
Score = 87.8 bits (96), Expect = 3e-12
Identities = 165/240 (69%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| ||
Sbjct 417573 TTCTTAGCACCACCACCAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTG 417632
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || |||| | ||| || ||| ||| || |||||||| || | |||||| ||
Sbjct 417633 TAGATGGACAAAGTACATTCATCTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGA 417692
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
||| | || ||| |||| ||||| || || || |||||||| | | ||| | ||
Sbjct 417693 TCACGAGGAATTTCTTCCTTATCCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAG 417752
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATG-TTTTAATGAATATCTGCATTTT 172072
| ||| || || ||||| || || | || | ||| | |||| | ||| |||||||||||
Sbjct 417753 GGTTCAACCTCAAGAGTGATAGTCT-ACTTGGTAAGGGTTTTCACGAAAATCTGCATTTT 417811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904946928403800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |