Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1818 116 3e-21 seq975 116 3e-21 seq293 109 5e-19 seq1 109 5e-19 seq9145 107 2e-18 seq2520 107 2e-18 seq788 107 2e-18 seq371 104 2e-17 seq182 100 3e-16 seq377 98.7 9e-16 seq203 95.1 1e-14 seq1526 93.3 4e-14 seq541 89.7 5e-13 seq322 84.2 2e-11 >seq1818 Length=636242 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 433227 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 433168 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 433167 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 433108 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || | ||||| ||| | | |||| || || ||| Sbjct 433107 CAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 433048 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 433047 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 433001 >seq975 Length=833997 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || ||| | | Sbjct 558714 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCGTCG 558655 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 558654 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 558595 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || || ||||| ||| | | |||| || || ||| Sbjct 558594 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 558535 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 558534 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 558488 >seq293 Length=1771812 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || | || || || || || ||||| | ||| || | Sbjct 533873 GATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTC 533932 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 533933 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 533992 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || || || ||||| ||| | | |||| || || || Sbjct 533993 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAA 534052 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||||||| || || || || | ||||| Sbjct 534053 CACTCAAAAGGAGTCCACTCTTCATCTTGTGTT 534085 >seq1 Length=12736304 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 12236886 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 12236827 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 12236826 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GATCAG 12236768 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || || ||||| ||| | | |||| || || ||| Sbjct 12236767 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 12236708 Query 24884 ATTCAAAAGGAATCGAC 24900 ||||||||||| || || Sbjct 12236707 ATTCAAAAGGAGTCTAC 12236691 >seq9145 Length=4041 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 498 GATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 439 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| |||| ||||| || | || |||||||| ||||| ||||| Sbjct 438 AGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCA 379 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 378 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 319 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || || || | |||||| || Sbjct 318 CATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 282 >seq2520 Length=369870 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || ||||| || ||| || | Sbjct 183990 GATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 184049 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| |||| ||||| || | || |||||||| ||||| ||||| Sbjct 184050 AGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCA 184109 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 184110 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 184169 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || || || | |||||| || Sbjct 184170 CATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAGA 184206 >seq788 Length=1000743 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 445224 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 445165 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||||||||| || || || || || || || Sbjct 445164 TGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCA 445105 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| || | ||||| || ||||||||||| ||| | | ||||||| ||||| Sbjct 445104 GCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAA 445045 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || ||||||||| | || | || || ||| Sbjct 445044 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTACGGGGTGGC 444996 >seq371 Length=1453275 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || | || || || || || ||||| || ||| || | Sbjct 449569 GATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAATCCTC 449628 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | |||||||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 449629 AGGTACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 449688 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 || | |||| || | || || || ||||| || || |||| | || || || | Sbjct 449689 GCA--GACTGATATTCACTGGCAAGCAACTGGAAGACA-GACAAACTTTGTGTGACTACA 449745 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | |||||| || Sbjct 449746 GCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 449783 >seq182 Length=1985155 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || | || || | ||| || | Sbjct 1379203 GATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCCTC 1379144 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | ||| |||||| ||| | ||||| || || || |||||||| ||||| ||||| Sbjct 1379143 GGGTACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 1379084 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 1379083 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTACAA 1379024 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 1379023 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1378976 >seq377 Length=1354867 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||||| || || || | || || || || ||| Sbjct 824629 ATGCAGATCTTCGTGAAGACCCTAACCGGCAAGACCATCCCCCTGGAGGTGGAGCCCAGT 824570 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| ||||| || || || || || || Sbjct 824569 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 824510 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||||||| Sbjct 824509 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTATAAC 824450 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 824449 ATCCAGAAAGAGTCGACCCTGCACCTGGT 824421 >seq203 Length=1941613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || | || || ||||| || || ||| Sbjct 1856182 GATGCAGATCTTCGTGAAGACCCTGACGGGCAAGAACATCACCCTCGAGGTTGAGCCCAG 1856123 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||||||||| || | || || || || || Sbjct 1856122 TGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGACATCCCGCCTGACCA 1856063 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || ||||||||||| | | | | | ||||||| ||||| Sbjct 1856062 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGCTGGCCGTACCCTGTCAGACTATAA 1856003 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || | || || || || ||||||||| Sbjct 1856002 TATCCAGA--GAGTCCACCCTGCACTTGGTG 1855974 >seq1526 Length=597461 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24830 TTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAA 24889 ||||||||||||||||||||||||||||| | | | | ||||||| || ||||| || Sbjct 458245 TTGATCTTTGCCGGGAAACAGCTGGAGGACGGGCGCACCCTGTCAGACTACAACATCCAG 458304 Query 24890 AAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || |||||||| |||| ||| | ||||| Sbjct 458305 AAGGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 458345 >seq541 Length=1170729 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 610732 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 610673 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| ||||| || || || || || || Sbjct 610672 GACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 610613 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 610612 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 610553 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 610552 ATCCAGAAAGAGTCAACTCTCCACCTGGT 610524 >seq322 Length=1513654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 277333 GATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCT-GAGGTCGAGCCCAG 277391 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || | || ||| || ||||||||| | || || || || || || || Sbjct 277392 TGACACCACTGAGAATGTCAAAGCCAAAATCCAAGACCAGGAGGGCATCCCGCCTGACCA 277451 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||| ||||| || |||||||| || ||| | | ||||||| ||||| Sbjct 277452 GCAGTGTCTGACTTTTGCGGGCAAACAGCTAGAAGATGGCTGTACTCTGTCAGACTATAA 277511 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || || ||||||||| Sbjct 277512 TATCCAGAAAGAGTCCACCCTGCACTTGGTG 277542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449803622015080