Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq788 141 6e-29 seq203 116 2e-21 seq322 111 1e-19 seq541 107 1e-18 seq377 107 1e-18 seq1526 91.5 1e-13 seq975 91.5 1e-13 seq1 91.5 1e-13 seq4063 86.0 4e-12 seq1309 86.0 4e-12 seq176 84.2 1e-11 seq2535 82.4 5e-11 seq496 82.4 5e-11 >seq788 Length=1000743 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| || |||||||| || || | || |||| Sbjct 445012 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 445071 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || || | ||| || |||||||| |||| | ||||||||||| Sbjct 445072 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 445131 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| ||| |||||| |||| ||| |||| Sbjct 445132 TGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 445189 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||| |||||||| |||||||||||||| Sbjct 445190 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq203 Length=1941613 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||| ||| |||| || |||||||| || ||| | || || | ||| Sbjct 1855975 ACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTCC 1856032 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || || || || ||||| || |||||||| |||| | |||||||||| | Sbjct 1856033 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGG 1856092 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||||| |||||| || || || | ||| ||| ||| || || | ||| ||| ||| Sbjct 1856093 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCT 1856150 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| |||||||| || ||||||||||| Sbjct 1856151 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq322 Length=1513654 Score = 111 bits (122), Expect = 1e-19 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||| ||| ||||| || |||||||| || || | | |||| || Sbjct 277541 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCT 277482 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || || || || |||| | |||||||| |||| | ||||||| ||| | Sbjct 277481 AGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGG 277422 Query 34889 ATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||||| |||||| || || | | ||| ||| |||||| ||| ||| ||||||| Sbjct 277421 ATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCGACCTCAG-GGTGATGGTCT 277365 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || ||||||||||| |||||||||||||| Sbjct 277364 TGCCTGTGAGGGTCTTCACAAAGATCTGCAT 277334 >seq541 Length=1170729 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || |||||||| | || ||| ||||| ||||| || || || Sbjct 610506 CCACCCCTCAGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 610565 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 610566 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 610625 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| || || | || || || ||| | | || | ||| ||| ||| || Sbjct 610626 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 610685 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 610686 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 610732 >seq377 Length=1354867 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| ||| |||||||| | ||| ||| ||||| |||||||| || || Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| || || | || || || || | | || | ||| ||| ||| || Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || || |||||||| || ||||||||||| Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 824629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||| ||||| || || || || || || |||| |||| Sbjct 824190 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCT 824249 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| | ||| ||||| || | |||||||| | || | ||||| || | Sbjct 824250 TCCATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATAT 824309 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | ||| ||| ||| || || | ||| |||||| Sbjct 824310 TGGATATTCGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 824369 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || |||||||| || |||||||||||| Sbjct 824370 TTGCCGGTTAGGGTCTTCACGAAGATCTGCATG 824402 >seq1526 Length=597461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 458345 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAC 458286 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCA 34850 ||| ||||| | || ||||| || || ||||| ||||||| Sbjct 458285 AGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCA 458246 >seq975 Length=833997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| || |||||| |||||||| ||||| || | |||| || Sbjct 558500 CTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA 558559 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || |||||||||| ||||| || | || | || ||||| Sbjct 558560 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 558619 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || | || || || | ||| ||| Sbjct 558620 TCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATG 558679 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || || |||||||| Sbjct 558680 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 558714 >seq1 Length=12736304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || | |||| |||| ||||||||||| || || || Sbjct 12236696 CTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAA 12236755 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| ||||| || | || | || ||||| || | || || || || Sbjct 12236756 GATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATT 12236814 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | || || || || || | ||| |||||||| ||||| ||||| || || Sbjct 12236815 TTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAC 12236874 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 12236875 GAAAATCTGCAT 12236886 >seq4063 Length=161870 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| | || | ||| || || |||| ||| | Sbjct 8400 AGCACCAAGTGCACGGTGGACTCTTTCTGTACATTGTGGTCTGAGAGAGTGCGTCCATTG 8341 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || | | || | |||||||| || | | |||||||||| Sbjct 8340 TCCAGCTGTTTGCCCGCAGAACTGAGATGCTGCTGGTCAGGCAGGATGTCCTCCTTGTCT 8281 Query 34886 TTTATTTT---TTG----TTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGT 34938 | ||||| ||| |||||| | | || | ||| ||| |||| | | | ||| Sbjct 8280 TGGATTTTGGCTTGGATTTTTGACATTTTCAATGGTGTCACTGGGCTCGGCCTTGAGGGT 8221 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||||| |||||||| |||||||||||||| Sbjct 8220 GATGGTCTTTCCCACTAGGGTCTTCACAAAGATCTGCAT 8182 >seq1309 Length=750738 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| || |||||| | || | | | |||| Sbjct 105684 AGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGCCTGAGGGAGCGTGGCCATCC 105743 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || | || || | ||||| | |||||||| |||| | ||||||||||| Sbjct 105744 TC-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 105802 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT-TCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | || | || ||| || |||||| || | ||| || || Sbjct 105803 TGGATTTTGGCTTTGACATTTT-TAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGT 105861 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| | || ||||| |||||||||||||| Sbjct 105862 CTTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894 >seq176 Length=2148545 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||||||| | | ||| ||||| ||||| || || || || |||| |||| Sbjct 212432 AGAACCAGGTGAGAG-TCAACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 212374 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG-TC 34884 ||||| ||||| | ||| ||||| || | | |||||| || || | |||||||| || Sbjct 212373 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTCCTGGTCATGGGGGATGCCCTCCTTTATC 212314 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || | | || | ||| ||| ||| || || | ||| ||||| Sbjct 212313 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 212254 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| | || |||||||| | ||||||||||| Sbjct 212253 CTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 212221 >seq2535 Length=378583 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 80266 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 80209 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | | ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 80208 CGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 80163 >seq496 Length=1197557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| |||| || || ||||| || || ||| |||| Sbjct 1032609 AGCACCAAGTGCAGGGTGGACTCTCTCTGGATATTGTAGTCGGACAG--TGCCGCCATCT 1032666 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || | || | | ||||| | || |||| || | | ||||||||||| Sbjct 1032667 TCCAGCTGTTCACCCACAGAAATCAGATGCAGCAGGTCAGGCAGGATGCCCTCCTTGTCC 1032726 Query 34886 TTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || |||||| || || | | ||| ||| ||| || || | ||| |||| Sbjct 1032727 TGGATGTTGGCTTTGAC--ATTCTCAGTGGTGTCAGTGGGCTCCACCTCGAGGGTGATGG 1032784 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||||| |||||||| |||||||||||||| Sbjct 1032785 TCTTGCCCGTCAGGGTCTTCTCAAAGATCTGCATG 1032819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325626467674109