Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq975 98.7 8e-16 seq1818 93.3 3e-14 seq182 84.2 2e-11 seq1 84.2 2e-11 >seq975 Length=833997 Score = 98.7 bits (108), Expect = 8e-16 Identities = 169/245 (69%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | || || || ||||| ||| |||| || | Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| |||||| ||||| ||||| | || ||| Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 ||||||||||| || | ||| || || || ||||| |||||| || || | || Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGA 558542 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788 |||||||||||||||||||||||| | || | ||||||||| | || || || ||| Sbjct 558541 CTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAA 558482 Query 107789 TAAAA 107793 |||| Sbjct 558481 GAAAA 558477 >seq1818 Length=636242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 168/245 (69%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | || || || ||||| ||| |||| || | Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| |||||| ||||| ||||| | || ||| Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 ||||||||||| || | ||| || || | ||||| |||||| || || | || Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGC----ACTTTGTCTGA 433055 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788 |||||||||||||||||||||||| | || | ||||||||| | || || || ||| Sbjct 433054 CTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAA 432995 Query 107789 TAAAA 107793 |||| Sbjct 432994 GAAAA 432990 >seq182 Length=1985155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 |||||| ||||| ||||| | || |||||||||||||| || | ||| || || Sbjct 1379118 AAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAG 1379059 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||| || | || || | |||||||||||||||||||||||||| | || Sbjct 1379058 CAACTGGAAGATGGATGCACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCAT 1378999 Query 107760 ATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 | ||||||||| | || || || ||| |||| Sbjct 1378998 CTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAA 1378965 >seq1 Length=12736304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/204 (70%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | || || || ||||| ||| |||| || | Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| |||||| ||||| ||||| | || | || Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCG-AT 12236771 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 ||||||||||| || | ||| || || || ||||| |||||| || || | || Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGA 12236715 Query 107729 CTACAACATTCAAAAGGAGTCTAC 107752 |||||||||||||||||||||||| Sbjct 12236714 CTACAACATTCAAAAGGAGTCTAC 12236691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398795562631879