Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq975 98.7 8e-16
seq1818 93.3 3e-14
seq182 84.2 2e-11
seq1 84.2 2e-11
>seq975
Length=833997
Score = 98.7 bits (108), Expect = 8e-16
Identities = 169/245 (69%), Gaps = 8/245 (3%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | || || || ||||| ||| |||| || |
Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| |||||| ||||| ||||| | || |||
Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728
||||||||||| || | ||| || || || ||||| |||||| || || | ||
Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGA 558542
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788
|||||||||||||||||||||||| | || | ||||||||| | || || || |||
Sbjct 558541 CTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAA 558482
Query 107789 TAAAA 107793
||||
Sbjct 558481 GAAAA 558477
>seq1818
Length=636242
Score = 93.3 bits (102), Expect = 3e-14
Identities = 168/245 (69%), Gaps = 8/245 (3%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | || || || ||||| ||| |||| || |
Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| |||||| ||||| ||||| | || |||
Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728
||||||||||| || | ||| || || | ||||| |||||| || || | ||
Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGC----ACTTTGTCTGA 433055
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788
|||||||||||||||||||||||| | || | ||||||||| | || || || |||
Sbjct 433054 CTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAA 432995
Query 107789 TAAAA 107793
||||
Sbjct 432994 GAAAA 432990
>seq182
Length=1985155
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699
|||||| ||||| ||||| | || |||||||||||||| || | ||| || ||
Sbjct 1379118 AAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAG 1379059
Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759
|| ||||| || | || || | |||||||||||||||||||||||||| | ||
Sbjct 1379058 CAACTGGAAGATGGATGCACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCAT 1378999
Query 107760 ATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793
| ||||||||| | || || || ||| ||||
Sbjct 1378998 CTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAA 1378965
>seq1
Length=12736304
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/204 (70%), Gaps = 9/204 (4%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | || || || ||||| ||| |||| || |
Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| |||||| ||||| ||||| | || | ||
Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCG-AT 12236771
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728
||||||||||| || | ||| || || || ||||| |||||| || || | ||
Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACTTTGTCTGA 12236715
Query 107729 CTACAACATTCAAAAGGAGTCTAC 107752
||||||||||||||||||||||||
Sbjct 12236714 CTACAACATTCAAAAGGAGTCTAC 12236691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398795562631879
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |