Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq975 123 2e-23 seq1818 118 8e-22 seq9145 109 4e-19 seq2520 109 4e-19 seq377 109 4e-19 seq1 109 4e-19 seq541 100 2e-16 seq182 100 2e-16 seq304 87.8 1e-12 >seq975 Length=833997 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | ||||| ||| Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || ||| |||||| || || || |||| || || || || || | Sbjct 558622 CTG-AATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGG 558680 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || | |||||| || || ||||||||||| Sbjct 558681 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717 >seq1818 Length=636242 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | ||||| ||| Sbjct 433015 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 433074 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||| ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 433075 TTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 433134 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || ||| |||||| || || || |||| || || || || || | Sbjct 433135 CTG-AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGG 433193 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || | |||||| || || ||||||||||| Sbjct 433194 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230 >seq9145 Length=4041 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| | ||||||||||| || || | | || || ||| Sbjct 285 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 344 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || | Sbjct 345 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 404 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || | | |||||| || || || |||| || || ||||| || | Sbjct 405 CTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGG 463 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || | |||||| || || |||||||| || Sbjct 464 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 500 >seq2520 Length=369870 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| | ||||||||||| || || | | || || ||| Sbjct 184203 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 184144 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || | Sbjct 184143 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 184084 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || | | |||||| || || || |||| || || ||||| || | Sbjct 184083 CTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGG 184025 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || | |||||| || || |||||||| || Sbjct 184024 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 183988 >seq377 Length=1354867 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||| |||| || || || || ||||| || ||||||||||| | | Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || || ||| |||| | |||||| | || || Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | || || ||||| |||| ||| || || || ||||||||||| Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 824632 >seq1 Length=12736304 Score = 109 bits (120), Expect = 4e-19 Identities = 147/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || || || ||||||||||| || || | | ||||| ||| || ||||| |||||| Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | |||| ||| ||||||| ||| ||||| || || || || || ||| || | || Sbjct 12236751 GCAAAGATCAGTCTCTGCTGAT-CGGAGGAATTCCTTCCTTATCCTG-AATCTTGGCCTT 12236808 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||||| || || || |||| || || || || || || || || || | ||| Sbjct 12236809 TACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 12236868 Query 29769 TTTAACAAATATCTGCATTTT 29789 ||| || || ||||||||||| Sbjct 12236869 TTTCACGAAAATCTGCATTTT 12236889 >seq541 Length=1170729 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| || || |||| || || || || ||||| || ||||| ||||| | | Sbjct 610506 CCACCCCTCAGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 610565 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 610566 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 610625 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || || || |||| | |||||| | || || Sbjct 610626 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 610685 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 610686 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 610735 >seq182 Length=1985155 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | |||| ||| Sbjct 1378990 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATC 1379049 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 1379050 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1379109 Query 29694 TTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || ||| |||||| || | || |||| | ||||| | || | Sbjct 1379110 CTG-AATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGG 1379168 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || | |||||| | || |||||||| || Sbjct 1379169 TCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205 >seq304 Length=1579526 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA-ATCCGCAATGGTGCGAGAAT 29632 || ||| | |||||| ||||| || ||||||||||| || || ||| | | | || Sbjct 417596 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAAAG-TACATTCAT 417654 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | | ||||| ||||||||| | |||| ||| |||||||| | ||||| | || || | Sbjct 417655 CTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACGAGGAATTTCTTCCTTAT 417714 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || || ||| ||||| || | || |||| || |||||||| |||| Sbjct 417715 CCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAGGGTTCAACCTCAAGAGTGATAG 417774 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | | || | |||||| || || ||||||||||| Sbjct 417775 TCTACTTGGTAAGGGTTTTCACGAAAATCTGCATTTT 417811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385140744211251