Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq975 123 2e-23
seq1818 118 8e-22
seq9145 109 4e-19
seq2520 109 4e-19
seq377 109 4e-19
seq1 109 4e-19
seq541 100 2e-16
seq182 100 2e-16
seq304 87.8 1e-12
>seq975
Length=833997
Score = 123 bits (136), Expect = 2e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || ||||||||||| || || | | ||||| |||
Sbjct 558502 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 558561
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || ||
Sbjct 558562 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 558621
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| |||||| || || || |||| || || || || || |
Sbjct 558622 CTG-AATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGG 558680
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || | |||||| || || |||||||||||
Sbjct 558681 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 558717
>seq1818
Length=636242
Score = 118 bits (130), Expect = 8e-22
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || ||||||||||| || || | | ||||| |||
Sbjct 433015 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATC 433074
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| |||| ||||||||| | |||| ||| |||||||| || ||||| || || || ||
Sbjct 433075 TTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 433134
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| |||||| || || || |||| || || || || || |
Sbjct 433135 CTG-AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGG 433193
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || | |||||| || || |||||||||||
Sbjct 433194 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 433230
>seq9145
Length=4041
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| | ||||||||||| || || | | || || |||
Sbjct 285 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 344
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || |
Sbjct 345 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 404
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || | | |||||| || || || |||| || || ||||| || |
Sbjct 405 CTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGG 463
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || | |||||| || || |||||||| ||
Sbjct 464 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 500
>seq2520
Length=369870
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| | ||||||||||| || || | | || || |||
Sbjct 184203 CAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 184144
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || |
Sbjct 184143 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 184084
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || | | |||||| || || || |||| || || ||||| || |
Sbjct 184083 CTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGG 184025
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || | |||||| || || |||||||| ||
Sbjct 184024 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 183988
>seq377
Length=1354867
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||| |||| || || || || ||||| || ||||||||||| | |
Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||| ||| | || | || ||||| || || ||
Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | || || ||| |||| | |||||| | || ||
Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || | || || ||||| |||| ||| || || || |||||||||||
Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 824632
>seq1
Length=12736304
Score = 109 bits (120), Expect = 4e-19
Identities = 147/201 (73%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649
|| || || ||||||||||| || || | | ||||| ||| || ||||| ||||||
Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCA 12236750
Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708
||| | |||| ||| ||||||| ||| ||||| || || || || || ||| || | ||
Sbjct 12236751 GCAAAGATCAGTCTCTGCTGAT-CGGAGGAATTCCTTCCTTATCCTG-AATCTTGGCCTT 12236808
Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768
||| |||||| || || || |||| || || || || || || || || || | |||
Sbjct 12236809 TACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 12236868
Query 29769 TTTAACAAATATCTGCATTTT 29789
||| || || |||||||||||
Sbjct 12236869 TTTCACGAAAATCTGCATTTT 12236889
>seq541
Length=1170729
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| || || |||| || || || || ||||| || ||||| ||||| | |
Sbjct 610506 CCACCCCTCAGACAGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 610565
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||| ||| | || | || ||||| || || ||
Sbjct 610566 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 610625
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | || || || |||| | |||||| | || ||
Sbjct 610626 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 610685
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || ||||| || | ||| || || || |||||||||||
Sbjct 610686 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 610735
>seq182
Length=1985155
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || ||||||||||| || || | | |||| |||
Sbjct 1378990 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATC 1379049
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || ||
Sbjct 1379050 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1379109
Query 29694 TTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| |||||| || | || |||| | ||||| | || |
Sbjct 1379110 CTG-AATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGATGATGG 1379168
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || | |||||| | || |||||||| ||
Sbjct 1379169 TCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATCTT 1379205
>seq304
Length=1579526
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA-ATCCGCAATGGTGCGAGAAT 29632
|| ||| | |||||| ||||| || ||||||||||| || || ||| | | | ||
Sbjct 417596 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAAAG-TACATTCAT 417654
Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
| | ||||| ||||||||| | |||| ||| |||||||| | ||||| | || || |
Sbjct 417655 CTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACGAGGAATTTCTTCCTTAT 417714
Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
| || | || || ||| ||||| || | || |||| || |||||||| ||||
Sbjct 417715 CCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAGGGTTCAACCTCAAGAGTGATAG 417774
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| | || | |||||| || || |||||||||||
Sbjct 417775 TCTACTTGGTAAGGGTTTTCACGAAAATCTGCATTTT 417811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385140744211251
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