Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq2092 113 4e-20
seq142 105 6e-18
>seq2092
Length=449501
Score = 113 bits (124), Expect = 4e-20
Identities = 618/978 (63%), Gaps = 43/978 (4%)
Strand=Plus/Minus
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
|||||||| ||| || || || || |||||||||||||| ||| ||||| | ||
Sbjct 279427 AAGACCCTTGCTACCATTGGGACAGGATTTGACTGTGCCAGCAAGACCGAGATATAATTG 279368
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
| |||| ||| || || | |||| ||||| | | ||| ||||||||||| ||
Sbjct 279367 GTACAAAGTCTTGGGGTGCCTCCAGAGAGGATTATCTGTGCAAATCCTTGTAAACAAGTG 279308
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
|| || || | |||||| || | |||||| | |||||||||| ||||||||||
Sbjct 279307 TCTCAGATTAAGTATGCTGCCAGTAATGGAGTCCAGATGATGACTTTCGATAGTGAAGTG 279248
Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563
|| | | ||| ||| | ||| | | || ||| |||| || |||||
Sbjct 279247 GAATTGATGAAAGTTGCCAGGGCGCATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCACC 279188
Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623
|||| || || ||| | | || ||||| || ||||| || | | || ||||
Sbjct 279187 AATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAATCAGC 279128
Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683
| || | || ||| | | | || | || || || | ||||||||||||
Sbjct 279127 AGGCTTCTTTTGGAATGGGCAAGAGAGCTAAATATTGATGTCATTGCTGTCAGCTTCCAC 279068
Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743
||||| |||||||||| || | || | | | ||||||| |||| ||| | |
Sbjct 279067 GTGGGAAGTGGCTGCACCCATCCTGAGACCTTCGTGCAAGCCATCTCTGATGCCCGCTGT 279008
Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801
| |||||| | || ||||| | || || ||||||| || | || || |||| |
Sbjct 279007 GTCTTTGACATGGG--AGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATCGGTGATG 278950
Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858
||||| || ||||| |||| || ||| | ||||| || || | || || |
Sbjct 278949 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTGATCA 278893
Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918
| | ||| |||| | | | || |||| || | || ||| || | || || |
Sbjct 278892 ATCCAGCCCTGGACAAGTACTTCCCAGCCGACTCGGGGGTGCGAATCATAGTAGAGCCCG 278833
Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976
|||| ||||| | | |||| || | || | | || | | ||||| |||||
Sbjct 278832 GCAGATACTATGTTGCCTCAGCCTTCACGCTCACAGTTAACATCATTGCCAAAAAACTCA 278773
Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGAT------------AAAAAGTTTATGT 21011
| || ||| ||| ||| || |||| ||| |||||||
Sbjct 278772 TATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTCGAGTGAACAAACCTTTATGT 278713
Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071
|||| || || ||||| || ||||| ||||| ||||| | | | | ||||| |
Sbjct 278712 ATTACGTGAACGATGGAGTGTATGGATCGTTTAATTGCATCCTCTATGATCATGCCCACG 278653
Query 21072 CTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATT 21130
| ||| | |||| || ||| | | || || || || || || | |||||
Sbjct 278652 TGAAGCCCCTTCTGCAGAATAGACACAAACC-AGATGAGAAGTACCATTCAACCAGCATA 278594
Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190
| ||| || | || |||||| | ||| ||||||| || | || || |||| ||| |
Sbjct 278593 TAGGGACCAACGTGTGATGGCCTGGATCGCATTGTCCAGGGCTGCGACTTGCCCGAGATG 278534
Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGTCAGCT-CTT 21248
|| |||||||| ||| | | |||||||||||||| ||||||| |||| | ||| |||
Sbjct 278533 CACGTGGGCGATTGGATGGTCTTTGAAAACATGGGTGCTTACACTCTTG--CTGCTGCTT 278476
Query 21249 CAACCTTTAACGGCTTCC 21266
| || || || || ||||
Sbjct 278475 CTACTTTCAATGGGTTCC 278458
>seq142
Length=2542468
Score = 105 bits (116), Expect = 6e-18
Identities = 690/1102 (63%), Gaps = 53/1102 (5%)
Strand=Plus/Plus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||| | ||| || | ||||| ||| | ||| |||| | |||||| | || |
Sbjct 1910194 ATGCCTTCTATGTCGCCGACCGGGGAGACATTTTAAAGAAACATCTGAGATGGTTAAAAG 1910253
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323
|| | ||| |||| || ||||| || || || | | || | || | | |
Sbjct 1910254 CTCTTCCTTGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 1910312
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
|||||||| ||| || | || || |||||||||||||| ||| ||||| || ||
Sbjct 1910313 AAGACCCTTGCTACCACTGGGACAGGATTTGACTGTGCCAGCAAGACTGAGATACAATTG 1910372
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
| |||| ||| || || | |||| ||||| | | ||| |||||||| || ||
Sbjct 1910373 GTACAAAGTCTTGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGCAAACAAGTG 1910432
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
|| || || | ||| || || | | ||||| | |||||||||||||||||||||
Sbjct 1910433 TCTCAGATTAAGTACGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 1910492
Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563
|| || | ||| ||| | ||| | | || ||| |||| || |||||
Sbjct 1910493 GAACTGATGAAAGTTGCCAGGGCGCATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCACC 1910552
Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623
||||| || || ||| | | || ||||| || ||||| || | | || ||||
Sbjct 1910553 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAATCAGC 1910612
Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683
| || | ||| || | | | | | | || || || ||||||||||||
Sbjct 1910613 AGGCTTCTTTTGGAACGAGCGAGAGAGCCAAATATTGTTGTCATTGGTGTCAGCTTCCAC 1910672
Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743
|||| |||||||||| ||| | || | | ||||||| |||| ||| | |
Sbjct 1910673 ATGGGAAGTGGCTGCACGGATCCTGAGACCTTTGTGCAAGCCATCTCTGATGCCCGCTGT 1910732
Query 20744 GCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCGGC 20803
| |||||| | || | | | | || || |||||| || | ||||| |||| ||
Sbjct 1910733 GTCTTTGACATGGGAGCTCAGGTTGGTTTCAGCATGTATCTGCTTGATATCAGTGGTGGT 1910792
Query 20804 TTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTAAC 20860
||||| || ||| |||| || ||| | ||||| || || | || || |||
Sbjct 1910793 TTTCCTGG-ATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGTGTGATCAAC 1910849
Query 20861 GCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACC------TGACAATTATTGGTGAA 20914
| ||| |||| | | | || | || |||||| || ||| || | ||
Sbjct 1910850 CCAGCCCTGGACAAGTACTTCC----TG--GCCAACTCAGGGGTGCGAATCATAGTGGAG 1910903
Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAAG 20974
|| |||| ||||| | | |||| || | || | | || | | ||||| |||||
Sbjct 1910904 CCCAGCAGATACTATGTTGCCTCAGCCTTCACGCTCACAGTGAACATCATTGCCAAAAAA 1910963
Query 20975 T--GTGTTGAAGACAC-------------TCCTGGAGATAA------------AAAGTTT 21007
|| || ||| || | || |||| | || |||
Sbjct 1910964 CTCGTATTAAAGGAACAGACAGGTTCTGATGATGAAGATGAGTTGAGTGAACAAACCTTT 1911023
Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067
|||||||| || || || || || ||||| ||||| ||||| | | | | |||||
Sbjct 1911024 ATGTATTACGTGAACGACGGAGTGTATGGATCATTTAATTGCATCCTCTATGATCATGCC 1911083
Query 21068 CGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAG 21126
| | ||| | |||| || ||| | || || || || ||||| | ||
Sbjct 1911084 CACGTGAAGCCCCTTCTGCAGAAGAGACCCAAACCA-GATGAGAAGTACTATTCAACCAG 1911142
Query 21127 CATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGA 21186
||| ||||| || | || || ||| | ||| ||||||| |||| || || |||| ||
Sbjct 1911143 CATATGGGGACCAACATGTGACGGCCTGGATCGCATTGTCGAGCGCTGCGACTTGCCCGA 1911202
Query 21187 GCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGTCAGCT 21245
| | || |||||||||||| | | |||||||||||||| ||||||| | ||| | |||
Sbjct 1911203 GATGCACGTGGGCGACTGGATGGTCTTTGAAAACATGGGTGCTTACACGGTTG--CTGCT 1911260
Query 21246 -CTTCAACCTTTAACGGCTTCC 21266
|||| || || ||||| ||||
Sbjct 1911261 GCTTCTACTTTCAACGGGTTCC 1911282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463448771118480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |