Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2092 113 4e-20 seq142 105 6e-18 >seq2092 Length=449501 Score = 113 bits (124), Expect = 4e-20 Identities = 618/978 (63%), Gaps = 43/978 (4%) Strand=Plus/Minus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||| || || || || |||||||||||||| ||| ||||| | || Sbjct 279427 AAGACCCTTGCTACCATTGGGACAGGATTTGACTGTGCCAGCAAGACCGAGATATAATTG 279368 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 | |||| ||| || || | |||| ||||| | | ||| ||||||||||| || Sbjct 279367 GTACAAAGTCTTGGGGTGCCTCCAGAGAGGATTATCTGTGCAAATCCTTGTAAACAAGTG 279308 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | |||||| | |||||||||| |||||||||| Sbjct 279307 TCTCAGATTAAGTATGCTGCCAGTAATGGAGTCCAGATGATGACTTTCGATAGTGAAGTG 279248 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 || | | ||| ||| | ||| | | || ||| |||| || ||||| Sbjct 279247 GAATTGATGAAAGTTGCCAGGGCGCATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCACC 279188 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 |||| || || ||| | | || ||||| || ||||| || | | || |||| Sbjct 279187 AATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAATCAGC 279128 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | || ||| | | | || | || || || | |||||||||||| Sbjct 279127 AGGCTTCTTTTGGAATGGGCAAGAGAGCTAAATATTGATGTCATTGCTGTCAGCTTCCAC 279068 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| |||||||||| || | || | | | ||||||| |||| ||| | | Sbjct 279067 GTGGGAAGTGGCTGCACCCATCCTGAGACCTTCGTGCAAGCCATCTCTGATGCCCGCTGT 279008 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | || || ||||||| || | || || |||| | Sbjct 279007 GTCTTTGACATGGG--AGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATCGGTGATG 278950 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| || || | || || | Sbjct 278949 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTGATCA 278893 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 | | ||| |||| | | | || |||| || | || ||| || | || || | Sbjct 278892 ATCCAGCCCTGGACAAGTACTTCCCAGCCGACTCGGGGGTGCGAATCATAGTAGAGCCCG 278833 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 |||| ||||| | | |||| || | || | | || | | ||||| ||||| Sbjct 278832 GCAGATACTATGTTGCCTCAGCCTTCACGCTCACAGTTAACATCATTGCCAAAAAACTCA 278773 Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGAT------------AAAAAGTTTATGT 21011 | || ||| ||| ||| || |||| ||| ||||||| Sbjct 278772 TATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTCGAGTGAACAAACCTTTATGT 278713 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 |||| || || ||||| || ||||| ||||| ||||| | | | | ||||| | Sbjct 278712 ATTACGTGAACGATGGAGTGTATGGATCGTTTAATTGCATCCTCTATGATCATGCCCACG 278653 Query 21072 CTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATT 21130 | ||| | |||| || ||| | | || || || || || || | ||||| Sbjct 278652 TGAAGCCCCTTCTGCAGAATAGACACAAACC-AGATGAGAAGTACCATTCAACCAGCATA 278594 Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190 | ||| || | || |||||| | ||| ||||||| || | || || |||| ||| | Sbjct 278593 TAGGGACCAACGTGTGATGGCCTGGATCGCATTGTCCAGGGCTGCGACTTGCCCGAGATG 278534 Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGTCAGCT-CTT 21248 || |||||||| ||| | | |||||||||||||| ||||||| |||| | ||| ||| Sbjct 278533 CACGTGGGCGATTGGATGGTCTTTGAAAACATGGGTGCTTACACTCTTG--CTGCTGCTT 278476 Query 21249 CAACCTTTAACGGCTTCC 21266 | || || || || |||| Sbjct 278475 CTACTTTCAATGGGTTCC 278458 >seq142 Length=2542468 Score = 105 bits (116), Expect = 6e-18 Identities = 690/1102 (63%), Gaps = 53/1102 (5%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || | ||||| ||| | ||| |||| | |||||| | || | Sbjct 1910194 ATGCCTTCTATGTCGCCGACCGGGGAGACATTTTAAAGAAACATCTGAGATGGTTAAAAG 1910253 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | | | Sbjct 1910254 CTCTTCCTTGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 1910312 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||| || | || || |||||||||||||| ||| ||||| || || Sbjct 1910313 AAGACCCTTGCTACCACTGGGACAGGATTTGACTGTGCCAGCAAGACTGAGATACAATTG 1910372 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 | |||| ||| || || | |||| ||||| | | ||| |||||||| || || Sbjct 1910373 GTACAAAGTCTTGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGCAAACAAGTG 1910432 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | ||| || || | | ||||| | ||||||||||||||||||||| Sbjct 1910433 TCTCAGATTAAGTACGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 1910492 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 || || | ||| ||| | ||| | | || ||| |||| || ||||| Sbjct 1910493 GAACTGATGAAAGTTGCCAGGGCGCATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCACC 1910552 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || ||||| || | | || |||| Sbjct 1910553 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAATCAGC 1910612 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | ||| || | | | | | | || || || |||||||||||| Sbjct 1910613 AGGCTTCTTTTGGAACGAGCGAGAGAGCCAAATATTGTTGTCATTGGTGTCAGCTTCCAC 1910672 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 |||| |||||||||| ||| | || | | ||||||| |||| ||| | | Sbjct 1910673 ATGGGAAGTGGCTGCACGGATCCTGAGACCTTTGTGCAAGCCATCTCTGATGCCCGCTGT 1910732 Query 20744 GCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCGGC 20803 | |||||| | || | | | | || || |||||| || | ||||| |||| || Sbjct 1910733 GTCTTTGACATGGGAGCTCAGGTTGGTTTCAGCATGTATCTGCTTGATATCAGTGGTGGT 1910792 Query 20804 TTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTAAC 20860 ||||| || ||| |||| || ||| | ||||| || || | || || ||| Sbjct 1910793 TTTCCTGG-ATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGTGTGATCAAC 1910849 Query 20861 GCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACC------TGACAATTATTGGTGAA 20914 | ||| |||| | | | || | || |||||| || ||| || | || Sbjct 1910850 CCAGCCCTGGACAAGTACTTCC----TG--GCCAACTCAGGGGTGCGAATCATAGTGGAG 1910903 Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAAG 20974 || |||| ||||| | | |||| || | || | | || | | ||||| ||||| Sbjct 1910904 CCCAGCAGATACTATGTTGCCTCAGCCTTCACGCTCACAGTGAACATCATTGCCAAAAAA 1910963 Query 20975 T--GTGTTGAAGACAC-------------TCCTGGAGATAA------------AAAGTTT 21007 || || ||| || | || |||| | || ||| Sbjct 1910964 CTCGTATTAAAGGAACAGACAGGTTCTGATGATGAAGATGAGTTGAGTGAACAAACCTTT 1911023 Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067 |||||||| || || || || || ||||| ||||| ||||| | | | | ||||| Sbjct 1911024 ATGTATTACGTGAACGACGGAGTGTATGGATCATTTAATTGCATCCTCTATGATCATGCC 1911083 Query 21068 CGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAG 21126 | | ||| | |||| || ||| | || || || || ||||| | || Sbjct 1911084 CACGTGAAGCCCCTTCTGCAGAAGAGACCCAAACCA-GATGAGAAGTACTATTCAACCAG 1911142 Query 21127 CATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGA 21186 ||| ||||| || | || || ||| | ||| ||||||| |||| || || |||| || Sbjct 1911143 CATATGGGGACCAACATGTGACGGCCTGGATCGCATTGTCGAGCGCTGCGACTTGCCCGA 1911202 Query 21187 GCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGTCAGCT 21245 | | || |||||||||||| | | |||||||||||||| ||||||| | ||| | ||| Sbjct 1911203 GATGCACGTGGGCGACTGGATGGTCTTTGAAAACATGGGTGCTTACACGGTTG--CTGCT 1911260 Query 21246 -CTTCAACCTTTAACGGCTTCC 21266 |||| || || ||||| |||| Sbjct 1911261 GCTTCTACTTTCAACGGGTTCC 1911282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463448771118480