Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq2269 96.9 3e-15 >seq2269 Length=456660 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || |||||||| |||| |||||| |||| ||||||||||||||||||| | || Sbjct 51887 CACAAAATCCAAAACAGATTATGAGAAAAGTTCAATATAATTTATTAAATAATTCCCGAG 51828 Query 231 GGCTTCTTTAAGAAGCATTAACA 253 |||| ||| ||| |||||||||| Sbjct 51827 GGCTCCTTGAAGGAGCATTAACA 51805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1072 CACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCAT 1131 |||||| |||| ||| |||||||||| ||| ||| |||| || | | | |||||||| Sbjct 49921 CACAGCCCTAGGTTCAGGTCTGAAAA-GAGGAGGCTTCTTCTGGGGGCAACAGAAGGCAT 49863 Query 1132 TTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 |||||||||| | | |||||| ||||||| | |||||| || ||||||| |||| Sbjct 49862 TTTAAAGAAATGACCCAGAAAAGAAATCTGTAGTATACTTACGTAGTCTTCCAAAAGT 49805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438468390298000